hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17211905/chunk_1/iprscan-20080502-17211905.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1948 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 376.3 4.5e-110 13 PF00096.16.fs Zinc finger, C2H2 type 357.8 1.7e-104 13 PF01096.9.fs Transcription factor S-II (TFIIS) 74.7 2e-22 12 PF01286.9.fs XPA protein N-terminal 34.0 6.4e-09 9 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 20.4 5.9e-06 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/13 125 147 .. 1 24 [] 26.7 2.1e-05 PF00096.16.ls 1/13 125 147 .. 1 24 [] 28.6 2e-05 PF00096.16.ls 2/13 153 175 .. 1 24 [] 33.8 5.4e-07 PF00096.16.fs 2/13 153 175 .. 1 24 [] 31.9 1.1e-06 PF00096.16.ls 3/13 181 203 .. 1 24 [] 21.8 0.0023 PF00096.16.ls 4/13 209 231 .. 1 24 [] 35.0 2.5e-07 PF00096.16.fs 4/13 209 231 .. 1 24 [] 33.0 5.7e-07 PF00096.16.ls 5/13 237 259 .. 1 24 [] 20.5 0.0056 PF00096.16.fs 5/13 237 257 .. 1 22 [. 25.6 3.9e-05 PF00096.16.ls 7/13 293 315 .. 1 24 [] 34.1 4.5e-07 PF00096.16.fs 7/13 293 315 .. 1 24 [] 32.1 9.3e-07 PF00096.16.ls 8/13 321 343 .. 1 24 [] 31.5 2.7e-06 PF00096.16.fs 8/13 321 343 .. 1 24 [] 29.5 4.1e-06 PF00096.16.ls 9/13 349 371 .. 1 24 [] 31.7 2.3e-06 PF00096.16.fs 9/13 349 371 .. 1 24 [] 29.8 3.6e-06 PF00096.16.fs 10/13 377 399 .. 1 24 [] 29.2 5e-06 PF00096.16.ls 10/13 377 399 .. 1 24 [] 31.2 3.4e-06 PF00096.16.ls 11/13 405 427 .. 1 24 [] 29.4 1.2e-05 PF00096.16.fs 11/13 405 427 .. 1 24 [] 27.4 1.4e-05 PF00096.16.fs 12/13 433 455 .. 1 24 [] 29.5 4.2e-06 PF00096.16.ls 12/13 433 455 .. 1 24 [] 31.5 2.8e-06 PF00096.16.ls 13/13 461 483 .. 1 24 [] 29.8 9.1e-06 PF00096.16.fs 13/13 461 483 .. 1 24 [] 27.8 1.1e-05 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 13, from 125 to 147: score 26.7, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L+ H r+H KIAA1948 125 YECK-ECGKAFRVRQQLTFHHRIH 147 PF00096.16.ls: domain 1 of 13, from 125 to 147: score 28.6, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L+ H r+H KIAA1948 125 YECK-ECGKAFRVRQQLTFHHRIH 147 PF00096.16.ls: domain 2 of 13, from 153 to 175: score 33.8, E = 5.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg +F++ ++L+rH+r H KIAA1948 153 YECK-ECGMAFRQTAHLTRHQRLH 175 PF00096.16.fs: domain 2 of 13, from 153 to 175: score 31.9, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg +F++ ++L+rH+r H KIAA1948 153 YECK-ECGMAFRQTAHLTRHQRLH 175 PF00096.16.ls: domain 3 of 13, from 181 to 203: score 21.8, E = 0.0023 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F ++L+ H+++H KIAA1948 181 YECK-ECGEAFICGADLRVHQKMH 203 PF00096.16.ls: domain 4 of 13, from 209 to 231: score 35.0, E = 2.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +++L+ H+r+H KIAA1948 209 YECK-ECGKAFRVRGQLTLHQRIH 231 PF00096.16.fs: domain 4 of 13, from 209 to 231: score 33.0, E = 5.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +++L+ H+r+H KIAA1948 209 YECK-ECGKAFRVRGQLTLHQRIH 231 PF00096.16.ls: domain 5 of 13, from 237 to 259: score 20.5, E = 0.0056 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ ++L+rH++ KIAA1948 237 YVCK-ECGKAFRQYAHLTRHQKLN 259 PF00096.16.fs: domain 5 of 13, from 237 to 257: score 25.6, E = 3.9e-05 *->ykCpfdCgksFsrksnLkrHlr<-* y+C+ +Cgk+F++ ++L+rH++ KIAA1948 237 YVCK-ECGKAFRQYAHLTRHQK 257 PF00096.16.ls: domain 7 of 13, from 293 to 315: score 34.1, E = 4.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L+ H+r+H KIAA1948 293 YECK-ECGKAFRVRQQLTLHQRIH 315 PF00096.16.fs: domain 7 of 13, from 293 to 315: score 32.1, E = 9.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L+ H+r+H KIAA1948 293 YECK-ECGKAFRVRQQLTLHQRIH 315 PF00096.16.ls: domain 8 of 13, from 321 to 343: score 31.5, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr ++L H r+H KIAA1948 321 YECK-ECGKTFSRGYHLILHHRIH 343 PF00096.16.fs: domain 8 of 13, from 321 to 343: score 29.5, E = 4.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr ++L H r+H KIAA1948 321 YECK-ECGKTFSRGYHLILHHRIH 343 PF00096.16.ls: domain 9 of 13, from 349 to 371: score 31.7, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fsr s+L +H+ +H KIAA1948 349 YECK-ECWKAFSRYSQLISHQSIH 371 PF00096.16.fs: domain 9 of 13, from 349 to 371: score 29.8, E = 3.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fsr s+L +H+ +H KIAA1948 349 YECK-ECWKAFSRYSQLISHQSIH 371 PF00096.16.fs: domain 10 of 13, from 377 to 399: score 29.2, E = 5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ s+L++H+ +H KIAA1948 377 YDCK-ECGKAFRLLSQLTQHQSIH 399 PF00096.16.ls: domain 10 of 13, from 377 to 399: score 31.2, E = 3.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ s+L++H+ +H KIAA1948 377 YDCK-ECGKAFRLLSQLTQHQSIH 399 PF00096.16.ls: domain 11 of 13, from 405 to 427: score 29.4, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ + L+ H+ +H KIAA1948 405 YKCK-ECGKAFRLRQKLTLHQSIH 427 PF00096.16.fs: domain 11 of 13, from 405 to 427: score 27.4, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ + L+ H+ +H KIAA1948 405 YKCK-ECGKAFRLRQKLTLHQSIH 427 PF00096.16.fs: domain 12 of 13, from 433 to 455: score 29.5, E = 4.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+F+ +s+L +Hlr+H KIAA1948 433 FECK-ECRKAFRLNSSLIQHLRIH 455 PF00096.16.ls: domain 12 of 13, from 433 to 455: score 31.5, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+F+ +s+L +Hlr+H KIAA1948 433 FECK-ECRKAFRLNSSLIQHLRIH 455 PF00096.16.ls: domain 13 of 13, from 461 to 483: score 29.8, E = 9.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k+F+++s+L++Hl++H KIAA1948 461 YECK-ECKKAFRQHSHLTHHLKIH 483 PF00096.16.fs: domain 13 of 13, from 461 to 483: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k+F+++s+L++Hl++H KIAA1948 461 YECK-ECKKAFRQHSHLTHHLKIH 483 //