hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17194027/chunk_1/iprscan-20080502-17194027.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1947 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 460.6 7.9e-134 18 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/18 30 52 .. 1 23 [] 6.7 55 SM00355 2/18 136 158 .. 1 23 [] 22.3 0.07 SM00355 3/18 164 186 .. 1 23 [] 27.4 0.0019 SM00355 4/18 192 214 .. 1 23 [] 27.7 0.0016 SM00355 5/18 220 242 .. 1 23 [] 29.6 0.00042 SM00355 6/18 248 270 .. 1 23 [] 28.2 0.0012 SM00355 7/18 276 298 .. 1 23 [] 25.1 0.0096 SM00355 8/18 304 326 .. 1 23 [] 18.1 1.3 SM00355 9/18 332 354 .. 1 23 [] 29.9 0.00034 SM00355 10/18 360 382 .. 1 23 [] 26.9 0.0027 SM00355 11/18 388 410 .. 1 23 [] 22.8 0.05 SM00355 12/18 416 438 .. 1 23 [] 27.0 0.0026 SM00355 13/18 444 466 .. 1 23 [] 27.8 0.0015 SM00355 14/18 472 494 .. 1 23 [] 21.9 0.089 SM00355 15/18 500 522 .. 1 23 [] 30.1 0.00031 SM00355 16/18 528 550 .. 1 23 [] 27.5 0.0018 SM00355 17/18 556 578 .. 1 23 [] 30.5 0.00023 SM00355 18/18 584 606 .. 1 23 [] 31.0 0.00016 Alignments of top-scoring domains: SM00355: domain 1 of 18, from 30 to 52: score 6.7, E = 55 *->ykCpigCgksfssk.aLkrHmrvH<-* C+ C+ ++ +L +H +H KIAA1947 30 QPCET-CSSLLKDIlHLAEHDGTH 52 SM00355: domain 2 of 18, from 136 to 158: score 22.3, E = 0.07 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f++++ L +H+++H KIAA1947 136 YSCTQ-CGKDFCHQhTLFEHQKIH 158 SM00355: domain 3 of 18, from 164 to 186: score 27.4, E = 0.0019 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f+ ++L++H+r H KIAA1947 164 YECSE-CGKLFRYNsDLIKHQRNH 186 SM00355: domain 4 of 18, from 192 to 214: score 27.7, E = 0.0016 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs k + ++H+++H KIAA1947 192 YKCSE-CGKAFSLKyNVVQHQKIH 214 SM00355: domain 5 of 18, from 220 to 242: score 29.6, E = 0.00042 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f +k++L +H+r+H KIAA1947 220 YECSE-CGKAFLRKsHLLQHQRIH 242 SM00355: domain 6 of 18, from 248 to 270: score 28.2, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f ++ +L+ H+++H KIAA1947 248 YVCSE-CGKAFLTQaHLVGHQKIH 270 SM00355: domain 7 of 18, from 276 to 298: score 25.1, E = 0.0096 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f +aL+rH++vH KIAA1947 276 YGCNE-CGKYFMYSsALIRHQKVH 298 SM00355: domain 8 of 18, from 304 to 326: score 18.1, E = 1.3 *->ykCpigCgksfssk.aLkrHmrvH<-* + C + Cgk f + L+ H+rvH KIAA1947 304 FYCCE-CGKFFMDScTLIIHQRVH 326 SM00355: domain 9 of 18, from 332 to 354: score 29.9, E = 0.00034 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f+ ++ L+rH++vH KIAA1947 332 YECNE-CGKFFRYRsTLIRHQKVH 354 SM00355: domain 10 of 18, from 360 to 382: score 26.9, E = 0.0027 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f + + L+ H+rvH KIAA1947 360 YECSE-CGKFFMDTsTLIIHQRVH 382 SM00355: domain 11 of 18, from 388 to 410: score 22.8, E = 0.05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f+ L+rH+rvH KIAA1947 388 YECNK-CGKFFRYCfTLNRHQRVH 410 SM00355: domain 12 of 18, from 416 to 438: score 27.0, E = 0.0026 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f + Lk H+rvH KIAA1947 416 YECSE-CGKFFVDScTLKSHQRVH 438 SM00355: domain 13 of 18, from 444 to 466: score 27.8, E = 0.0015 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+i Cgksf+ ++ L H+r+H KIAA1947 444 FECSI-CGKSFRCRsTLDTHQRIH 466 SM00355: domain 14 of 18, from 472 to 494: score 21.9, E = 0.089 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ ++ +rH r H KIAA1947 472 YECSE-CGKFFRHNsNHIRHRRNH 494 SM00355: domain 15 of 18, from 500 to 522: score 30.1, E = 0.00031 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cg++fs+ ++L+rH++vH KIAA1947 500 FECTE-CGRVFSQNsHLIRHQKVH 522 SM00355: domain 16 of 18, from 528 to 550: score 27.5, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f + + L+ H rvH KIAA1947 528 YKCSK-CGKFFMDSsTLISHERVH 550 SM00355: domain 17 of 18, from 556 to 578: score 30.5, E = 0.00023 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f+ ++L++H r+H KIAA1947 556 YECSE-CGKVFRYNsSLIKHRRIH 578 SM00355: domain 18 of 18, from 584 to 606: score 31.0, E = 0.00016 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg++f++ ++L++H++vH KIAA1947 584 YQCSE-CGRVFNQNsHLIQHQKVH 606 //