hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17194027/chunk_1/iprscan-20080502-17194027.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1947 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 536.5 2.7e-158 17 PF00096.16.fs Zinc finger, C2H2 type 503.0 3.2e-148 17 PF01286.9.fs XPA protein N-terminal 91.7 2.2e-25 15 PF01096.9.fs Transcription factor S-II (TFIIS) 55.5 1.7e-16 16 PF07754.2.fs Domain of unknown function (DUF1610) 25.5 8.3e-06 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/17 136 158 .. 1 24 [] 23.4 0.00014 PF00096.16.ls 1/17 136 158 .. 1 24 [] 25.4 0.00019 PF00096.16.ls 2/17 164 186 .. 1 24 [] 34.6 3.3e-07 PF00096.16.fs 2/17 164 186 .. 1 24 [] 32.6 7.2e-07 PF00096.16.ls 3/17 192 214 .. 1 24 [] 32.3 1.6e-06 PF00096.16.fs 3/17 192 214 .. 1 24 [] 30.3 2.6e-06 PF00096.16.ls 4/17 220 242 .. 1 24 [] 34.6 3.2e-07 PF00096.16.fs 4/17 220 242 .. 1 24 [] 32.6 7.1e-07 PF00096.16.ls 5/17 248 270 .. 1 24 [] 30.3 6.3e-06 PF00096.16.fs 5/17 248 270 .. 1 24 [] 28.3 8.2e-06 PF00096.16.fs 6/17 276 298 .. 1 24 [] 27.7 1.2e-05 PF00096.16.ls 6/17 276 298 .. 1 24 [] 29.7 9.5e-06 PF00096.16.ls 7/17 304 326 .. 1 24 [] 23.1 0.00091 PF00096.16.ls 8/17 332 354 .. 1 24 [] 36.1 1.1e-07 PF00096.16.fs 8/17 332 354 .. 1 24 [] 34.1 3e-07 PF00096.16.ls 9/17 360 382 .. 1 24 [] 32.0 1.9e-06 PF00096.16.fs 9/17 360 382 .. 1 24 [] 30.1 3.1e-06 PF00096.16.ls 10/17 388 410 .. 1 24 [] 29.1 1.5e-05 PF00096.16.fs 10/17 388 410 .. 1 24 [] 27.1 1.7e-05 PF00096.16.ls 11/17 416 438 .. 1 24 [] 31.8 2.2e-06 PF00096.16.fs 11/17 416 438 .. 1 24 [] 29.8 3.5e-06 PF00096.16.fs 12/17 444 466 .. 1 24 [] 26.7 2.1e-05 PF00096.16.ls 12/17 444 466 .. 1 24 [] 28.6 2e-05 PF00096.16.ls 13/17 472 494 .. 1 24 [] 25.1 0.00022 PF00096.16.fs 13/17 472 494 .. 1 24 [] 23.2 0.00016 PF00096.16.ls 14/17 500 522 .. 1 24 [] 38.1 2.9e-08 PF00096.16.fs 14/17 500 522 .. 1 24 [] 36.1 9.5e-08 PF00096.16.fs 15/17 528 550 .. 1 24 [] 30.1 3e-06 PF00096.16.ls 15/17 528 550 .. 1 24 [] 32.1 1.9e-06 PF00096.16.fs 16/17 556 578 .. 1 24 [] 34.8 2e-07 PF00096.16.ls 16/17 556 578 .. 1 24 [] 36.8 6.9e-08 PF00096.16.ls 17/17 584 606 .. 1 24 [] 36.8 6.9e-08 PF00096.16.fs 17/17 584 606 .. 1 24 [] 34.8 2e-07 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 17, from 136 to 158: score 23.4, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++++L H+++H KIAA1947 136 YSCT-QCGKDFCHQHTLFEHQKIH 158 PF00096.16.ls: domain 1 of 17, from 136 to 158: score 25.4, E = 0.00019 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++++L H+++H KIAA1947 136 YSCT-QCGKDFCHQHTLFEHQKIH 158 PF00096.16.ls: domain 2 of 17, from 164 to 186: score 34.6, E = 3.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +s+L +H+r H KIAA1947 164 YECS-ECGKLFRYNSDLIKHQRNH 186 PF00096.16.fs: domain 2 of 17, from 164 to 186: score 32.6, E = 7.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +s+L +H+r H KIAA1947 164 YECS-ECGKLFRYNSDLIKHQRNH 186 PF00096.16.ls: domain 3 of 17, from 192 to 214: score 32.3, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs k+n +H+++H KIAA1947 192 YKCS-ECGKAFSLKYNVVQHQKIH 214 PF00096.16.fs: domain 3 of 17, from 192 to 214: score 30.3, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs k+n +H+++H KIAA1947 192 YKCS-ECGKAFSLKYNVVQHQKIH 214 PF00096.16.ls: domain 4 of 17, from 220 to 242: score 34.6, E = 3.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F rks+L +H+r+H KIAA1947 220 YECS-ECGKAFLRKSHLLQHQRIH 242 PF00096.16.fs: domain 4 of 17, from 220 to 242: score 32.6, E = 7.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F rks+L +H+r+H KIAA1947 220 YECS-ECGKAFLRKSHLLQHQRIH 242 PF00096.16.ls: domain 5 of 17, from 248 to 270: score 30.3, E = 6.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++++L H+++H KIAA1947 248 YVCS-ECGKAFLTQAHLVGHQKIH 270 PF00096.16.fs: domain 5 of 17, from 248 to 270: score 28.3, E = 8.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++++L H+++H KIAA1947 248 YVCS-ECGKAFLTQAHLVGHQKIH 270 PF00096.16.fs: domain 6 of 17, from 276 to 298: score 27.7, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F +s L rH+++H KIAA1947 276 YGCN-ECGKYFMYSSALIRHQKVH 298 PF00096.16.ls: domain 6 of 17, from 276 to 298: score 29.7, E = 9.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F +s L rH+++H KIAA1947 276 YGCN-ECGKYFMYSSALIRHQKVH 298 PF00096.16.ls: domain 7 of 17, from 304 to 326: score 23.1, E = 0.00091 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C +Cgk F ++ +L H+r+H KIAA1947 304 FYCC-ECGKFFMDSCTLIIHQRVH 326 PF00096.16.ls: domain 8 of 17, from 332 to 354: score 36.1, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +s+L rH+++H KIAA1947 332 YECN-ECGKFFRYRSTLIRHQKVH 354 PF00096.16.fs: domain 8 of 17, from 332 to 354: score 34.1, E = 3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +s+L rH+++H KIAA1947 332 YECN-ECGKFFRYRSTLIRHQKVH 354 PF00096.16.ls: domain 9 of 17, from 360 to 382: score 32.0, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F + s+L H+r+H KIAA1947 360 YECS-ECGKFFMDTSTLIIHQRVH 382 PF00096.16.fs: domain 9 of 17, from 360 to 382: score 30.1, E = 3.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F + s+L H+r+H KIAA1947 360 YECS-ECGKFFMDTSTLIIHQRVH 382 PF00096.16.ls: domain 10 of 17, from 388 to 410: score 29.1, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +L+rH+r+H KIAA1947 388 YECN-KCGKFFRYCFTLNRHQRVH 410 PF00096.16.fs: domain 10 of 17, from 388 to 410: score 27.1, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +L+rH+r+H KIAA1947 388 YECN-KCGKFFRYCFTLNRHQRVH 410 PF00096.16.ls: domain 11 of 17, from 416 to 438: score 31.8, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ++ +Lk+H+r+H KIAA1947 416 YECS-ECGKFFVDSCTLKSHQRVH 438 PF00096.16.fs: domain 11 of 17, from 416 to 438: score 29.8, E = 3.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ++ +Lk+H+r+H KIAA1947 416 YECS-ECGKFFVDSCTLKSHQRVH 438 PF00096.16.fs: domain 12 of 17, from 444 to 466: score 26.7, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ +s+L +H+r+H KIAA1947 444 FECS-ICGKSFRCRSTLDTHQRIH 466 PF00096.16.ls: domain 12 of 17, from 444 to 466: score 28.6, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ +s+L +H+r+H KIAA1947 444 FECS-ICGKSFRCRSTLDTHQRIH 466 PF00096.16.ls: domain 13 of 17, from 472 to 494: score 25.1, E = 0.00022 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++sn rH+r H KIAA1947 472 YECS-ECGKFFRHNSNHIRHRRNH 494 PF00096.16.fs: domain 13 of 17, from 472 to 494: score 23.2, E = 0.00016 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++sn rH+r H KIAA1947 472 YECS-ECGKFFRHNSNHIRHRRNH 494 PF00096.16.ls: domain 14 of 17, from 500 to 522: score 38.1, E = 2.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++Fs++s+L rH+++H KIAA1947 500 FECT-ECGRVFSQNSHLIRHQKVH 522 PF00096.16.fs: domain 14 of 17, from 500 to 522: score 36.1, E = 9.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++Fs++s+L rH+++H KIAA1947 500 FECT-ECGRVFSQNSHLIRHQKVH 522 PF00096.16.fs: domain 15 of 17, from 528 to 550: score 30.1, E = 3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F ++s+L +H r+H KIAA1947 528 YKCS-KCGKFFMDSSTLISHERVH 550 PF00096.16.ls: domain 15 of 17, from 528 to 550: score 32.1, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F ++s+L +H r+H KIAA1947 528 YKCS-KCGKFFMDSSTLISHERVH 550 PF00096.16.fs: domain 16 of 17, from 556 to 578: score 34.8, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s+L +H+r+H KIAA1947 556 YECS-ECGKVFRYNSSLIKHRRIH 578 PF00096.16.ls: domain 16 of 17, from 556 to 578: score 36.8, E = 6.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s+L +H+r+H KIAA1947 556 YECS-ECGKVFRYNSSLIKHRRIH 578 PF00096.16.ls: domain 17 of 17, from 584 to 606: score 36.8, E = 6.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F+++s+L +H+++H KIAA1947 584 YQCS-ECGRVFNQNSHLIQHQKVH 606 PF00096.16.fs: domain 17 of 17, from 584 to 606: score 34.8, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F+++s+L +H+++H KIAA1947 584 YQCS-ECGRVFNQNSHLIQHQKVH 606 //