hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17125856/chunk_1/iprscan-20080502-17125856.nocrc
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Query sequence: KIAA1943
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00237                                                  41.8    9.1e-08   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00237    1/3     351   449 ..     1   106 []     7.6    0.074
SM00237    2/3     464   567 ..     1   106 []     0.7     0.26
SM00237    3/3     581   681 ..     1   106 []    33.5  2.8e-05

Alignments of top-scoring domains:
SM00237: domain 1 of 3, from 351 to 449: score 7.6, E = 0.074
                   *->atvtilDddhagtvgFeqp...hytVsEsdGevevtVvRtggtargt
                        ++   dd+ g+++F++++++ y  +E+   ve+ ++R++g    +
    KIAA1943   351    DLIILENDDPGGVFEFSPAsrgPYVIKEGES-VELHIIRSRG-SLVK 395  

                   vvVpyrTedGTAtaGgsDYepvdIeGtLtFepgegtekeIrikiidDdiy
                      +yr e  + ++      +++  G+L+F+pge  e  I+     D i 
    KIAA1943   396 QFLHYRVEPRDSNEF-----YGN-TGVLEFKPGE-REIVITLLARLDGIP 438  

                   EerdEtFyvrLs<-*
                   E  dE++ v+Ls   
    KIAA1943   439 EL-DEHYWVVLS    449  

SM00237: domain 2 of 3, from 464 to 567: score 0.7, E = 0.26
                   *->atvtilDdd.hagtvgFeqphytVs..EsdG....evevtVvRtggt
                      +++til +d++ g+++F +    V+ +Es G+   +++  VvR +g 
    KIAA1943   464    VNITILKNDdPHGIIEFVSDGLIVMinESKGdaiySAVYDVVRNRG- 509  

                   argtvvVpyrTedGTAtaGgsDYepvdIeGtLtFepgegtekeIrikiid
                     g v+V++  + +  ++      pv   Gt++F+++e   k I+i  + 
    KIAA1943   510 NFGDVSVSWVVSPDFTQDV----FPV--QGTVVFGDQE-FSKNITIYSLP 552  

                   DdiyEerdEtFyvrLs<-*
                   D+i Ee  E F+v L+   
    KIAA1943   553 DEIPEE-MEEFTVILL    567  

SM00237: domain 3 of 3, from 581 to 681: score 33.5, E = 2.8e-05
                   *->atvtilDddhagtvgFeqphytVsEsdGevevtVvRtggtargtvvV
                      at  i  +d+++ ++ e+ +++V E+   + +tV+R g   + t +V
    KIAA1943   581    ATLRIRRNDDPIYFA-EPRVVRVQEGET-ANFTVLRNGS-VDVTCMV 624  

                   pyrTedGTAtaGgsDYepvdIeGtLtFepgegtekeIrikiidDdiyEer
                   +y T dG Ata ++D++pv    tL+Fe g   ++ I+i +  D i E  
    KIAA1943   625 QYATKDGKATARERDFIPVEKGETLIFEVGS-RQQSISIFVNEDGIPET- 672  

                   dEtFyvrLs<-*
                   dE Fy+ L    
    KIAA1943   673 DEPFYIILF    681  

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