hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17125856/chunk_1/iprscan-20080502-17125856.nocrc
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Query sequence: KIAA1943
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF03160.5.fs Calx-beta domain                               85.6    1.2e-22   5
PF03160.5.ls Calx-beta domain                               53.0      9e-13   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF03160.5.fs   5/5     581   681 ..     1   109 []    51.1  2.8e-13
PF03160.5.ls   1/1     581   681 ..     1   109 []    53.0    9e-13

Alignments of top-scoring domains:
PF03160.5.fs: domain 5 of 5, from 581 to 681: score 51.1, E = 2.8e-13
                   *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
                      at  I  + d ++ + ep+v++V    + +++ ++V r g     + 
    KIAA1943   581    ATLRIRRN-DDPIYFAEPRVVRV---QEGETANFTVLRNGS---VDV 620  

                   tVtVsyrTeDGTAtaGPgsDYeptegt.iLtFgPgedtekcinvtiiDDd
                   t +V y T DG Ata    D++p+e  ++L+F+ g   ++ i++ +++D 
    KIAA1943   621 TCMVQYATKDGKATAR-ERDFIPVEKGeTLIFEVGS-RQQSISIFVNEDG 668  

                   vyEgdEnFfvrLs<-*
                   + E dE F+++L    
    KIAA1943   669 IPETDEPFYIILF    681  

PF03160.5.ls: domain 1 of 1, from 581 to 681: score 53.0, E = 9e-13
                   *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
                      at  I  + d ++ + ep+v++V    + +++ ++V r g     + 
    KIAA1943   581    ATLRIRRN-DDPIYFAEPRVVRV---QEGETANFTVLRNGS---VDV 620  

                   tVtVsyrTeDGTAtaGPgsDYeptegt.iLtFgPgedtekcinvtiiDDd
                   t +V y T DG Ata    D++p+e  ++L+F+ g   ++ i++ +++D 
    KIAA1943   621 TCMVQYATKDGKATAR-ERDFIPVEKGeTLIFEVGS-RQQSISIFVNEDG 668  

                   vyEgdEnFfvrLs<-*
                   + E dE F+++L    
    KIAA1943   669 IPETDEPFYIILF    681  

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