# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh10956.fasta.huge -Q ../query/KIAA1943.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
KIAA1943, 1054 aa
vs ./tmplib.25089 library
1986451 residues in 2037 sequences
Expectation_n fit: rho(ln(x))= 4.6777+/-0.0045; mu= 15.9910+/- 0.306
mean_var=76.3466+/-18.345, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40
Lambda= 0.146784
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 39, opt: 27, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2037)
KIAA1500 ( 2240 res) hh12031s1 (2240) 191 51.4 1.6e-06
>>KIAA1500 ( 2240 res) hh12031s1 (2240 aa)
initn: 141 init1: 86 opt: 191 Z-score: 209.0 bits: 51.4 E(): 1.6e-06
Smith-Waterman score: 219; 21.726% identity (50.000% similar) in 672 aa overlap (99-720:772-1408)
70 80 90 100 110 120
KIAA19 EAYLLQILPHTIRGGAEVSEPAELLFYIQDSDDVY----GLITFFPMENQKIESSPGERY
::.:. .::.: . . .. . :
KIAA15 LIRYVLHKEKIREMMDSFQFLVKDSKPNVVSDNVFHIQWSLISF-KYTSYNVSEKAGS--
750 760 770 780 790
130 140 150 160 170 180
KIAA19 LSLSFTRLGGTKGDVRLLYSVLYIPAGAVDPLQAKEGILN-ISRRNDLIFPEQKTQVTTK
.:.. : :. . . .: . :.. . .... : . . ... : :.. .
KIAA15 VSVTVQRTGNLNQYAIVLCRTEQGTASSSSRVSSQPGQQDYVEYAGQVQFDEREDTKSCT
800 810 820 830 840 850
190 200 210 220 230 240
KIAA19 LPIRNDAFLQNGAHFLVQLETVELLNIIPLIPPISPRFGEICNISLLVTPAIANGEIGFL
. : .: ..: : :.: : .::. . ..... . . . :
KIAA15 IVINDDDVFENVESFTVELSM-----------PAYALLGEFTQAKVIINDTEDEPTLEFD
860 870 880 890 900
250 260 270 280 290 300
KIAA19 SNLPIILHEPEDFAAEVVYIPLHRDGTDGQ--ATVYWSLKPSGFNSKAVTPDDIGPFNGS
... . .: : .. :..: : .. ... ... :...:. . .. . :..
KIAA15 KKIYWV-NESAGF----LFAPIERKGDASSIVSAICYTVPKSAMGSSLYALESGSDFKSR
910 920 930 940 950 960
310 320 330 340 350
KIAA19 -------VLFLSGQSDTTINITIKGDDIPEMNETVTLSLDRVNVENQVLKSGYTSRDLII
:.: : . .: .. . :. : .: ..: .. .: . :.. ::
KIAA15 GMSAASRVIFGPGVTMSTCDVMLIDDSEYEEEEEFEIALADAS-DNARIGRVATAKVLI-
970 980 990 1000 1010 1020
360 370 380 390 400 410
KIAA19 LENDDPGGVFEFSPASRGPYVIKEGESVELHIIRSRGSLVKQFLHYRVEPRDSNEFYGNT
. :. . : .. . : ... .:.. .:: .:. .. : : :. ..
KIAA15 ---SGPNDASTVSLGNTAFTVSEDAGTVKIPVIR-HGTDLSTFASVWCATRPSDPASATP
1030 1040 1050 1060 1070
420 430 440 450 460
KIAA19 GV--------LEFKPG--EREIVITLL--ARLDGIPELDEHYWVVLSSHGERESKLGSAT
:: .:: :: :. ..:.: .. : :. . . :..: . .: .:
KIAA15 GVDYVPSSRKVEFGPGVIEQYCTLTILDDTQYPVIEGLETFVFFLSSAQGAELTKPFQA-
1080 1090 1100 1110 1120 1130
470 480 490 500 510 520
KIAA19 IVNITILKNDDPHGIIEFVSDGLIVMINESKGDAIYSAVYDVVRNRG-NFGDVSVSWVVS
.. :. .: : ..:..: :.: .:. . . :. . . : : :
KIAA15 VIAINDTFQDVPS--MQFAKDLLLVKEKEGVLHVPITRSGDLSYESSVRCYTQSHSAQVM
1140 1150 1160 1170 1180 1190
530 540 550 560 570
KIAA19 PDFTQDVFPVQGTVVFGDQEFSKNITIYSLPDEIPEEMEEFTVILL----NGTGGAKVGN
:: . .. ..: . :: :.: : . : :.: : : : .::..:.
KIAA15 EDFEERQNADSSRITFLKGDKVKNCTVYIHDDSMFEPEEQFRVYLGLPLGNHWSGARIGK
1200 1210 1220 1230 1240 1250
580 590 600 610 620 630
KIAA19 RTTATLRIRRNDD-P-IYFAEPRV-VRVQEGETA----NFTVLRNGSVDVTCMVQYATKD
. ::. : ..: : : : : :: : : :. :.: :. . : :. .:.:
KIAA15 NNMATITISNDEDAPTIEFEEAAYQVREPAGPDAIAILNIKVIRRGDQNRTSKVRCSTRD
1260 1270 1280 1290 1300 1310
640 650 660 670 680
KIAA19 GKATARERDFIPVEKGETLIFEVGSRQQ--SISIFVNEDG--------IPETDEPFYIIL
:.: . :. : :...: : : . .. :. ::: . :.: .:
KIAA15 GSAQSGV-DYYP--KSRVLKFSPGVDHIFFKVEILSNEDREWHESFSLVLGPDDPVEAVL
1320 1330 1340 1350 1360 1370
690 700 710 720 730
KIAA19 FNSTGDTVVY--QYGVATVIIEANDDPNGIFSLEPIDKAVEEGKTNAFWILRHRGYFGSV
. : ::. : .....:. : : . .: :. :::
KIAA15 GDVTTATVTILDQEAAGSLILPA---PPIVVTLADYDH-VEEVTKEGVKKSPSPGYPLVC
1380 1390 1400 1410 1420
740 750 760 770 780 790
KIAA19 SVSWQLFQNDSALQPGQEFYETSGTVNFMDGEEAKPIILHAFPDKIPEFNEFYFLKLVNI
KIAA15 VTPCDPHFPRYAVMKERCSEAGINQTSVQFSWEVAAPTDGNGARSPFETITDNTPFTSVN
1430 1440 1450 1460 1470 1480
1054 residues in 1 query sequences
1986451 residues in 2037 library sequences
Scomplib [34.26]
start: Thu Dec 18 15:23:00 2008 done: Thu Dec 18 15:23:01 2008
Total Scan time: 0.680 Total Display time: 0.060
Function used was FASTA [version 34.26.5 April 26, 2007]