hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17111581/chunk_1/iprscan-20080502-17111581.nocrc
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Query sequence: KIAA1942
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 133.9    1.7e-35   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/4     202   242 ..     1    46 []    22.8    0.047
SM00320    2/4     248   289 ..     1    46 []    34.1  1.9e-05
SM00320    3/4     296   335 ..     1    46 []    37.3  2.1e-06
SM00320    4/4     341   381 ..     1    46 []    39.7  3.9e-07

Alignments of top-scoring domains:
SM00320: domain 1 of 4, from 202 to 242: score 22.8, E = 0.047
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + k+++++ gH g  +  ++++sp       + +l++g+  ++i+lW
    KIAA1942   202    QmKPIFSFAGHMG--EGFALDWSPRV-----TGRLLTGDcQKNIHLW 241  

                   d<-*
                       
    KIAA1942   242 T    242  

SM00320: domain 2 of 4, from 248 to 289: score 34.1, E = 1.9e-05
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      ++ + +    gHt   +V ++++sp+      ++++as+s D +ir+
    KIAA1942   248    SwHVDQRPFvGHTR--SVEDLQWSPTE-----NTVFASCSaDASIRI 287  

                   Wd<-*
                   Wd   
    KIAA1942   288 WD    289  

SM00320: domain 3 of 4, from 296 to 335: score 37.3, E = 2.1e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   l t ++H+g  +V+ +++s          +l+sg++Dg +++W
    KIAA1942   296    KaCMLTTATAHDG--DVNVISWSRQE------PFLLSGGdDGALKIW 334  

                   d<-*
                   d   
    KIAA1942   335 D    335  

SM00320: domain 4 of 4, from 341 to 381: score 39.7, E = 3.9e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++++t+k H +  pVtsv ++p +     + ++a+++ D++i  W
    KIAA1942   341    SgSPVATFKQHVA--PVTSVEWHPQD-----SGVFAASGaDHQITQW 380  

                   d<-*
                   d   
    KIAA1942   381 D    381  

//