hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17111581/chunk_1/iprscan-20080502-17111581.nocrc
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Query sequence: KIAA1942
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       132.7    9.2e-37   4
PF00400.22.fs WD domain, G-beta repeat                       124.8    2.3e-34   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/4     203   242 ..     1    38 []    17.8  0.00048
PF00400.22.fs   2/4     250   289 ..     1    38 []    39.6  3.4e-10
PF00400.22.ls   2/4     250   289 ..     1    38 []    41.6  2.5e-09
PF00400.22.ls   3/4     297   335 ..     1    38 []    36.0  1.2e-07
PF00400.22.fs   3/4     297   335 ..     1    38 []    34.0  1.3e-08
PF00400.22.ls   4/4     342   381 ..     1    38 []    35.3  1.9e-07
PF00400.22.fs   4/4     342   381 ..     1    38 []    33.4    2e-08

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 4, from 203 to 242: score 17.8, E = 0.00048
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +++ ++ gH +   ++++sp    +l++g + ++i++W    
    KIAA1942   203    MKPIfSFaGHMGEGFALDWSPRVTGRLLTGDCQKNIHLWT    242  

PF00400.22.fs: domain 2 of 4, from 250 to 289: score 39.6, E = 3.4e-10
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         ++ + gHt +V+++ +sp + +++as+S+D +i+iWd   
    KIAA1942   250    HVDQrPFvGHTRSVEDLQWSPTENTVFASCSADASIRIWD    289  

PF00400.22.ls: domain 2 of 4, from 250 to 289: score 41.6, E = 2.5e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         ++ + gHt +V+++ +sp + +++as+S+D +i+iWd   
    KIAA1942   250    HVDQrPFvGHTRSVEDLQWSPTENTVFASCSADASIRIWD    289  

PF00400.22.ls: domain 3 of 4, from 297 to 335: score 36.0, E = 1.2e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + +++ ++H + V+ +++s    p+l+sg++Dg +kiWd   
    KIAA1942   297    ACMLtTAtAHDGDVNVISWSRQ-EPFLLSGGDDGALKIWD    335  

PF00400.22.fs: domain 3 of 4, from 297 to 335: score 34.0, E = 1.3e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + +++ ++H + V+ +++s    p+l+sg++Dg +kiWd   
    KIAA1942   297    ACMLtTAtAHDGDVNVISWSRQ-EPFLLSGGDDGALKIWD    335  

PF00400.22.ls: domain 4 of 4, from 342 to 381: score 35.3, E = 1.9e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g ++ +++ H ++Vt+v ++p ++ ++a +++D+ i  Wd   
    KIAA1942   342    GSPVaTFkQHVAPVTSVEWHPQDSGVFAASGADHQITQWD    381  

PF00400.22.fs: domain 4 of 4, from 342 to 381: score 33.4, E = 2e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g ++ +++ H ++Vt+v ++p ++ ++a +++D+ i  Wd   
    KIAA1942   342    GSPVaTFkQHVAPVTSVEWHPQDSGVFAASGADHQITQWD    381  

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