# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg00781.fasta.huge -Q ../query/KIAA1942.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1942, 445 aa vs ./tmplib.25089 library 1987060 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.7023+/-0.00633; mu= 4.3960+/- 0.427 mean_var=152.2240+/-39.134, 0's: 0 Z-trim: 12 B-trim: 136 in 1/39 Lambda= 0.103952 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1242 ( 504 res) fh10406 ( 504) 218 44.4 2e-05 KIAA0925 ( 479 res) hh02949 ( 479) 186 39.6 0.00053 KIAA1374 ( 764 res) fj04345 ( 764) 181 39.0 0.0012 KIAA0199 ( 1283 res) ha03150s1 (1283) 170 37.6 0.0056 KIAA1645 ( 386 res) fg04139 ( 386) 161 35.7 0.0062 >>KIAA1242 ( 504 res) fh10406 (504 aa) initn: 129 init1: 75 opt: 218 Z-score: 189.3 bits: 44.4 E(): 2e-05 Smith-Waterman score: 235; 26.180% identity (55.794% similar) in 233 aa overlap (218-443:245-458) 190 200 210 220 230 240 KIAA19 EPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKN-IHLWTPTDG .. :: : : :.. .:. ...: . : KIAA12 GLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSER--GNLVAVGTHKGFVQIWDAAAG 220 230 240 250 260 270 250 260 270 280 290 300 KIAA19 GSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLTTATAH . . . ::: : : :. . ..: : : : :::. : .. .: KIAA12 KKLSMLE----GHTARVGALAWNAEQ---LSSGSRDRMILQRDIRTPPLQSE--RRLQGH 280 290 300 310 320 310 320 330 340 350 360 KIAA19 DGDVNVISWSRQEPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSG .: ..:: .. .: :::.:. : .:. .: ::: . .:.: : .. : :.. : KIAA12 RQEVCGLKWSTDHQLLASGGNDNKLLVWN---HSSLSPVQQYTEHLAAVKAIAWSPHQHG 330 340 350 360 370 380 370 380 390 400 410 420 KIAA19 VFAASG--ADHQITQWDLAVERDP----EAGDVEADPGLADLPQQLLFVHQGETELKELH ..:..: ::. : :. .. .: ..:. . . . ..:. .: : .. . : KIAA12 LLASGGGTADRCIRFWN-TLTGQPLQCIDTGSQVCNLAWSKHANELVSTH-GYSQNQILV 390 400 410 420 430 430 440 KIAA19 WHPQCPGLLVSTALSGFTIFRTISV : . :.: . :.: . .:.. KIAA12 W--KYPSLTQVAKLTGHS-YRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKTRSTKESVS 440 450 460 470 480 490 >>KIAA0925 ( 479 res) hh02949 (479 aa) initn: 294 init1: 133 opt: 186 Z-score: 163.7 bits: 39.6 E(): 0.00053 Smith-Waterman score: 186; 28.226% identity (59.677% similar) in 124 aa overlap (258-377:84-203) 230 240 250 260 270 280 KIAA19 RLLTGDCQKNIHLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRI :: .: :..:.: ....:::: :.:.:: KIAA09 IVTESAGGGSFLVIPLEQTGRIEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRI 60 70 80 90 100 110 290 300 310 320 330 340 KIAA19 WDIRAAPSKACM---LTTATAHDGDVNVISWS-RQEPFLLSGGDDGALKIWDLRQFKSGS :.: . : : : .:. :... : . .:.:.: : . ::.: : KIAA09 WEIPEGGLKRNMTEALLELHGHSRRVGLVEWHPTTNNILFSAGYDYKVLIWNL---DVGE 120 130 140 150 160 170 350 360 370 380 390 400 KIAA19 PVATFKQHVAPVTSVEWHPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLP :: . :. . . .. :....... :... KIAA09 PVKMIDCHTDVILCMSFNT-DGSLLTTTCKDKKLRVIEPRSGRVLQEANCKNHRVNRVVF 180 190 200 210 220 410 420 430 440 KIAA19 QQLLFVHQGETELKELHWHPQCPGLLVSTALSGFTIFRTISV KIAA09 LGNMKRLLTTGVSRWNTRQIALWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHMLYLAGK 230 240 250 260 270 280 >>KIAA1374 ( 764 res) fj04345 (764 aa) initn: 98 init1: 98 opt: 181 Z-score: 157.1 bits: 39.0 E(): 0.0012 Smith-Waterman score: 201; 25.131% identity (54.974% similar) in 191 aa overlap (208-393:88-259) 180 190 200 210 220 230 KIAA19 ALRRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKN : .: : .: :. . :. . .:. . . KIAA13 VKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGE-DGQ 60 70 80 90 100 110 240 250 260 270 280 290 KIAA19 IHLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKA :..:. : . . .. . : .. :.: . :. . . . :. . :. KIAA13 IKIWSKTG-----MLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQ----PNAK 120 130 140 150 160 300 310 320 330 340 350 KIAA19 CMLTTATAHDGDVNVISWSRQEPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTS . :::: . ..:. . ..::.:.: :.:: . : :. . . : :.:: KIAA13 VL--QWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWD----SYGRPLYNSQPHEHPITS 170 180 190 200 210 220 360 370 380 390 400 410 KIAA19 VEWHPQDSGVFAASGADHQI-----TQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQG : : : :. .::. :. : . : :. :.:. :..:.. KIAA13 VAWAP-DGELFAV-GSFHTLRLCDKTGWSYALEK-PNTGSIFNIAWSIDGTQIAGACGNG 230 240 250 260 270 420 430 440 KIAA19 ETELKELHWHPQCPGLLVSTALSGFTIFRTISV KIAA13 HVVFAHVVEQHWEWKNFQVTLTKRRAMQVRNVLNDAVDLLEFRDRVIKASLNYAHLVVST 280 290 300 310 320 330 >>KIAA0199 ( 1283 res) ha03150s1 (1283 aa) initn: 134 init1: 71 opt: 170 Z-score: 145.3 bits: 37.6 E(): 0.0056 Smith-Waterman score: 174; 25.495% identity (48.762% similar) in 404 aa overlap (3-381:818-1190) 10 20 KIAA19 AARKGR-RRTCETGEPMEA-ESGDTSSEG-PA : :: :: .: .:: :: . :.: : KIAA01 SDGMLLVSCCLAGHVCVWDAQTGDCLTRIPRPGRQRRDSGVGSGLEAQESWERLSDGGKA 790 800 810 820 830 840 30 40 50 60 70 80 KIAA19 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCL---SFDIVRDHLGDNRTELPLTL :: .::::. . :. : :: .:. .. : : KIAA01 GPEEPGDSPPLRHRPR---GPPPPSLFGD-QPDLTCLIDTNFSAQPRSSQPTQPE-PRHR 850 860 870 880 890 900 90 100 110 120 130 KIAA19 YLCAGTQAESAQSNRLMMLRMHNLHGTK----P---PPSEGSDEEEEEEDEEDEEERKPQ .:. .. . . .. :... .: : ::: : . ::: : : . KIAA01 AVCGRSRDSPGYDFSCLVQRVYQEEGLAAVCTPALRPPSPGPVLSQAPEDEGGSPE-KGS 910 920 930 940 950 960 140 150 160 170 180 190 KIAA19 LELAMVPHY-GGINRVRVSWLGEEPVAGVWSEKGQVEVF-ALRRLLQVVEEP--QALAA- :: .: :.: .... :. :.: : :..::. :.. .: : ....: KIAA01 PSLAWAPSAEGSIWSLELQ--GNLIVVGRSS--GRLEVWDAIEGVLCCSSEEVSSGITAL 970 980 990 1000 1010 200 210 220 230 240 KIAA19 -FL--RDEQAQMK---PIFSFAGHMGEGFALDWSP-RVTGRLLTGDCQKNIHLWTPTDGG :: : :... .::. : :: :: . : :. . ... .: KIAA01 VFLDKRIVAARLNGSLDFFSLETHT----AL--SPLQFRGTPGRGSSPAS-PVYSSSDTV 1020 1030 1040 1050 1060 1070 250 260 270 280 290 300 KIAA19 SWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLTTATAHD . :. . .: . . :. . . ... : : ..:.. .. .: : : .:. KIAA01 ACHLTHTVPCAHQKPITALKAAAGR---LVTGSQDHTLRVFRLE----DSCCLFTLQGHS 1080 1090 1100 1110 1120 310 320 330 340 350 360 KIAA19 GDVNVISWSRQEPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGV : .... . : : :::.:::. .::. .:: :. : . :::. .. KIAA01 GAITTV-YIDQTMVLASGGQDGAICLWDV---LTGSRVSHVFAHRGDVTSLT---CTTSC 1130 1140 1150 1160 1170 370 380 390 400 410 420 KIAA19 FAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKELHWHPQCPG .:: : :. :: KIAA01 VISSGLDDLISIWDRSTGIKFYSIQQDLGCGASLGVISDNLLVTGGQGCVSFWDLNYGDL 1180 1190 1200 1210 1220 1230 >>KIAA1645 ( 386 res) fg04139 (386 aa) initn: 106 init1: 62 opt: 161 Z-score: 144.6 bits: 35.7 E(): 0.0062 Smith-Waterman score: 161; 24.481% identity (55.602% similar) in 241 aa overlap (204-426:117-346) 180 190 200 210 220 230 KIAA19 VEVFALRRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVT-GR-LLT . . .. :: :. . : . :: ::. KIAA16 FCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGHGGQ--CVTWLQTLPQGRQLLS 90 100 110 120 130 140 240 250 260 270 280 KIAA19 GDCQKNIHLWTPTDGGSWHVDQRPF--VGHTRSVEDLQWSPTENTVFASCSADASIRIWD . .. :: ..: : ::. . :: :: .: . . . ..: ..: . KIAA16 QGRDLKLCLWDLAEGRSAVVDSVCLESVGFCRSSILAGGQPRWTLAVPGRGSDE-VQILE 150 160 170 180 190 200 290 300 310 320 330 340 KIAA19 IRAAPSKA--CMLTT-ATAHDG-DVNVISWS---RQEPFLLSGGDDGALKIWDLRQFKSG . :::. : : : :. : . . :. ..:.::.: .::.. .::. . : KIAA16 M---PSKTSVCALKPKADAKLGMPMCLRLWQADCSSRPLLLAGYEDGSVVLWDVSEQKVC 210 220 230 240 250 260 350 360 370 380 390 KIAA19 SPVATFKQHVAPVTSVEWHPQDS-GVFAASGADHQITQWDLAVERDPEA-GDVE-ADPGL : .: : :: .... : . :. ...: . .. :.: .. .. : : ..::. KIAA16 SRIAC---HEEPVMDLDFDSQKARGISGSAG--KALAVWSLDWQQALQVRGTHELTNPGI 270 280 290 300 310 400 410 420 430 440 KIAA19 ADL---PQQLLFVHQG-ETELKELHWHPQCPGLLVSTALSGFTIFRTISV :.. :.. ... : . ... .::. . : KIAA16 AEVTIRPDRKILATAGWDHRIRVFHWRTMQPLAVLAFHSAAVQCVAFTADGLLAAGSKDQ 320 330 340 350 360 370 KIAA16 RISLWSLYPRA 380 445 residues in 1 query sequences 1987060 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:22:58 2008 done: Thu Dec 18 15:22:59 2008 Total Scan time: 0.420 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]