hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17093751/chunk_1/iprscan-20080502-17093751.nocrc
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Query sequence: KIAA1941
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00593                                                 130.9    1.4e-34   2
SM00164                                                 115.1    7.9e-30   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00593     1/2     170   230 ..     1    68 []    78.4  8.6e-19
SM00593     2/2     332   388 ..     1    68 []    52.5  5.6e-11
SM00164     1/1     975  1193 ..     1   310 []   115.1  7.9e-30

Alignments of top-scoring domains:
SM00593: domain 1 of 2, from 170 to 230: score 78.4, E = 8.6e-19
                   *->frAwirlaLneklLsswLnlLlsdrkllskyYepwAflrsaeadpee
                      +++wir aL ek+L++++++L++++   skyYe++A+l++    p+ 
    KIAA1941   170    KHLWIRTALFEKVLDKIVHYLVENS---SKYYEKEALLMD----PVD 209  

                   geqlltlLqgLsaldfnlpvd<-*
                   g +l++lL+g++al+++ +++   
    KIAA1941   210 GPILASLLVGPCALEYTKMKT    230  

SM00593: domain 2 of 2, from 332 to 388: score 52.5, E = 5.6e-11
                   *->frAwirlaLneklLsswLnlLlsdrkllskyYepwAflrsaeadpee
                          +  aL ek+L++++++L++++   skyYe++A+l++    p+ 
    KIAA1941   332    ----LKSALFEKVLDKIVHYLVENS---SKYYEKEALLMD----PVD 367  

                   geqlltlLqgLsaldfnlpvd<-*
                   g +l++lL+g++al+++ +++   
    KIAA1941   368 GPILASLLVGPCALEYTKMKT    388  

SM00164: domain 1 of 1, from 975 to 1193: score 115.1, E = 7.9e-30
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      ++    +sl + +  l   ++ ++ s++ +                 
    KIAA1941   975    SEEPEMESLFPALASLAVTTSANEVSPVSS----------------- 1004 

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                    +   Ys +l    +                                  l
    KIAA1941  1005 -SGVTYSPELLDLYTVN--------------------------------L 1021 

                   dqIekDlkRtfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                   ++IekD++R+++++ +F                 ++++e+Lr+++  Y +
    KIAA1941  1022 HRIEKDVQRCDRNYWYF----------------TPANLEKLRNIMCSYIW 1055 

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                    + e  +gY+QGm++l+apLL+ ++  dE+ AF cf++Lm+r+ +nf+  
    KIAA1941  1056 QHIE--IGYVQGMCDLLAPLLVILD--DEALAFSCFTELMKRMNQNFP-- 1099 

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl
                               ++  + +++sl+++ + eL++ + ++            
    KIAA1941  1100 --------HGGAMDTHFANMRSLIQILDSELFELMHQN-----------G 1130 

                   eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala
                   + +   +++rWfL+ F+rel ++dv+ +w+ ++a    ++ + +++iala
    KIAA1941  1131 DYTHFYFCYRWFLLDFKRELVYDDVFLVWETIWAAKHVSSAHYVLFIALA 1180 

                   iLklnedkllkld<-*
                   ++  ++d++l+++   
    KIAA1941  1181 LVEVYRDIILENN    1193 

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