hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17093751/chunk_1/iprscan-20080502-17093751.nocrc
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Query sequence: KIAA1941
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02759.9.fs RUN domain                                     185.7    4.3e-53   2
PF02759.9.ls RUN domain                                     155.5    1.3e-43   2
PF00566.9.fs TBC domain                                      24.7    1.4e-06   1
PF00566.9.ls TBC domain                                     -42.7    0.00014   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02759.9.fs   1/2      87   231 ..     1   174 []   129.0    9e-37
PF02759.9.ls   1/2      87   231 ..     1   174 []   130.8  3.5e-36
PF02759.9.ls   2/2     264   389 ..     1   174 []    24.7  8.4e-06
PF02759.9.fs   2/2     335   389 ..   113   174 .]    56.7  5.6e-16
PF00566.9.ls   1/1    1003  1192 ..     1   219 []   -42.7  0.00014
PF00566.9.fs   1/1    1023  1091 ..    48   120 ..    24.7  1.4e-06

Alignments of top-scoring domains:
PF02759.9.fs: domain 1 of 2, from 87 to 231: score 129.0, E = 9e-37
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      ++C a+eA+++HGL+r                        +a+++l+
    KIAA1941    87    SFCAAVEACVLHGLRR------------------------RAAGFLR 109  

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   s +      ++l      + +++k +p+ae l ++v+ +eqL e     +
    KIAA1941   110 SNK-----IAAL------FMKVGKNFPPAEDLSRKVQDLEQLIE-----S 143  

                   ktavgrgR..................KyAWiRlaLneksLssylklLlsd
                   + + ++g +++ ++ ++ ++ ++   K+ WiR+aL ek+L++++ +L+++
    KIAA1941   144 ARNQIQGLqenvrklpklpnlsplaiKHLWIRTALFEKVLDKIVHYLVEN 193  

                   eellrkyYkpnAlLrdpSdeegCeillslLqgLsaldFsLdlkfe<-*
                    +   kyY+++AlL+dp  + g  il+slL+g++al+++ ++k++   
    KIAA1941   194 SS---KYYEKEALLMDP--VDG-PILASLLVGPCALEYT-KMKTA    231  

PF02759.9.ls: domain 1 of 2, from 87 to 231: score 130.8, E = 3.5e-36
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      ++C a+eA+++HGL+r                        +a+++l+
    KIAA1941    87    SFCAAVEACVLHGLRR------------------------RAAGFLR 109  

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   s +      ++l      + +++k +p+ae l ++v+ +eqL e     +
    KIAA1941   110 SNK-----IAAL------FMKVGKNFPPAEDLSRKVQDLEQLIE-----S 143  

                   ktavgrgR..................KyAWiRlaLneksLssylklLlsd
                   + + ++g +++ ++ ++ ++ ++   K+ WiR+aL ek+L++++ +L+++
    KIAA1941   144 ARNQIQGLqenvrklpklpnlsplaiKHLWIRTALFEKVLDKIVHYLVEN 193  

                   eellrkyYkpnAlLrdpSdeegCeillslLqgLsaldFsLdlkfe<-*
                    +   kyY+++AlL+dp  + g  il+slL+g++al+++ ++k++   
    KIAA1941   194 SS---KYYEKEALLMDP--VDG-PILASLLVGPCALEYT-KMKTA    231  

PF02759.9.ls: domain 2 of 2, from 264 to 389: score 24.7, E = 8.4e-06
                   *->tLCpaleA...llsHGLkrpelltgaihpwafiedaaagefekaals
                      +LC+ ++++++ ++++              + + d     + +++++
    KIAA1941   264    ALCIQKRHssgSMDDRPS------------LSARDYVESLHQNSRAT 298  

                   vlssssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrS
                   +l+ +          +           vl++ +   + v  +  L++   
    KIAA1941   299 LLYGKN---------N-----------VLVQPRDDMEAVPGYLSLHQ--- 325  

                   sviktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLr
                       ta++          aL ek+L++++ +L+++ +   kyY+++AlL+
    KIAA1941   326 ----TADVMTL-----KSALFEKVLDKIVHYLVENSS---KYYEKEALLM 363  

                   dpSdeegCeillslLqgLsaldFsLdlkfe<-*
                   dp  + g  il+slL+g++al+++ ++k++   
    KIAA1941   364 DP--VDG-PILASLLVGPCALEYT-KMKTA    389  

PF02759.9.fs: domain 2 of 2, from 335 to 389: score 56.7, E = 5.6e-16
                   *->aLneksLssylklLlsdeellrkyYkpnAlLrdpSdeegCeillslL
                      aL ek+L++++ +L+++ +   kyY+++AlL+dp  + g  il+slL
    KIAA1941   335    ALFEKVLDKIVHYLVENSS---KYYEKEALLMDP--VDG-PILASLL 375  

                   qgLsaldFsLdlkfe<-*
                   +g++al+++ ++k++   
    KIAA1941   376 VGPCALEYT-KMKTA    389  

PF00566.9.ls: domain 1 of 1, from 1003 to 1192: score -42.7, E = 0.00014
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                      +  Gv  s       +++  y  +                       
    KIAA1941  1003    SSSGVTYS------PELLDLYTVN---------------------LH 1022 

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                   +IekDv+R    +  F          kLr++   Y w   ++gY+QGM  
    KIAA1941  1023 RIEKDVQRCDRNYWYFT-P---ANLEKLRNIMCSYIWQHIEIGYVQGMCD 1068 

                   vaApfLllykSEeqAFyfLdrLlenv...vPlKYylpdldGvrlDqkvLd
                   + Ap+L++   E  AF ++  L+   +++ P       +d+  +  +   
    KIAA1941  1069 LLAPLLVILDDEALAFSCFTELMKRMnqnFPH---GGAMDTHFANMR--- 1112 

                   sfveellprLYeYLlskgvdlkvv.sLpwfLsLyattlPleeAlrIfDiL
                   s +  l+ +L+e + + g     +    wfL  +   l  +  + ++   
    KIAA1941  1113 SLIQILDSELFELMHQNGDYTHFYfCYRWFLLDFKRELVYDDVFLVWETI 1162 

                   Fad....GivllfrvaLAvLkilkeqiLda<-*
                    a ++ +  +  + +aLA   ++++ iL+    
    KIAA1941  1163 WAAkhvsSAHYVLFIALALVEVYRDIILEN    1192 

PF00566.9.fs: domain 1 of 1, from 1023 to 1091: score 24.7, E = 1.4e-06
                   *->kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQG
                      +IekDv+R    +  F          kLr++   Y w   ++gY+QG
    KIAA1941  1023    RIEKDVQRCDRNYWYFT-P---ANLEKLRNIMCSYIWQHIEIGYVQG 1065 

                   MNVvaApfLllykSEeqAFyfLdrLl<-*
                   M  + Ap+L++   E  AF ++  L+   
    KIAA1941  1066 MCDLLAPLLVILDDEALAFSCFTELM    1091 

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