hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17075048/chunk_1/iprscan-20080502-17075048.nocrc
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Query sequence: KIAA1940
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00646.23.fs F-box domain                                    22.8    4.7e-05   1
PF00646.23.ls F-box domain                                    24.0    0.00049   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00646.23.ls   1/1     494   540 ..     1    46 []    24.0  0.00049
PF00646.23.fs   1/1     502   540 ..    10    46 .]    22.8  4.7e-05

Alignments of top-scoring domains:
PF00646.23.ls: domain 1 of 1, from 494 to 540: score 24.0, E = 0.00049
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                      + +l++   +l +I+ +Ld++ ll ++ V++ wr +++++ +w + l
    KIAA1940   494    PEILKMR-AALFCIFTYLDTRTLLHAAEVCRDWRFVARHPaVWTrVL 539  

                   l<-*
                   l   
    KIAA1940   540 L    540  

PF00646.23.fs: domain 1 of 1, from 502 to 540: score 22.8, E = 4.7e-05
                   *->llleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kll<-*
                      +l +I+ +Ld++ ll ++ V++ wr +++++ +w + ll   
    KIAA1940   502    ALFCIFTYLDTRTLLHAAEVCRDWRFVARHPaVWTrVLL    540  

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