hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17060720/chunk_1/iprscan-20080502-17060720.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1939 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01652 ATPase-Plipid: phospholipid-translocati 1173.2 0 1 TIGR01494 ATPase_P-type: ATPase, P-type (transpor 347.3 8.5e-102 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01652 1/1 2 992 .. 1 1249 [] 1173.2 0 TIGR01494 2/7 208 302 .. 156 237 .. 73.6 1.4e-19 TIGR01494 5/7 532 581 .. 317 366 .. 66.2 1.3e-17 TIGR01494 6/7 676 783 .. 365 466 .. 132.1 5.1e-37 Alignments of top-scoring domains: TIGR01652: domain 1 of 1, from 2 to 992: score 1173.2, E = 0 *->FpsNkIsTtKYtvlTFlPKnLFeQFkrfANiYFLvvAllqqvPilsp KIAA1939 - ----------------------------------------------- - tnrgtsivPLavVLlvtaiKeAiEDirRrkrDkevNNrltevLegveNeN rR+++ l +L++ KIAA1939 2 --------------------------RRFIL------VLRKILQN----- 14 vltdnIsLWRklKKFIsytkedlseelKkkrisRKRHellvtkTVdtish KIAA1939 - -------------------------------------------------- - RsSLdSidayrlSvdydrleldeinleqganeasvvdrsltgssdgkFve KIAA1939 15 ------------------------------------------E------- 15 ikWKdlrVGDIvKVkkderiPADllLLSSSepdGvCYVETaNLDGETNLK kW +++VGDI+K+ +++++ ADllLLSSSep G+CYVETa LDGETNLK KIAA1939 16 -KWMNVKVGDIIKLENNQFVAADLLLLSSSEPHGLCYVETAELDGETNLK 64 lRqAleeTqkm.lteediknfsGeIecEqPnasLYsFqGnlkidgkaksk +R+Al+ T+ ++ + +++ f G ++cE Pn+ L +F G l +++ KIAA1939 65 VRHALSVTSELgADISRLAGFDGIVVCEVPNNKLDKFMGILSWKD----- 109 IrqlPLspdNiLLRGctLrNTkwviGvVvYTGhDTKlmrNatkaGPsKRS + +L+ + i+LRGc+LrNT w++G V+++G DTKlm+N++k+ + KR+ KIAA1939 110 -SKHSLNNEKIILRGCILRNTSWCFGMVIFAGPDTKLMQNSGKT-KFKRT 157 riEkelNflIiiLFllLivLclissvgagiysdadgkd.ldlirwYleld i + +N l++ +F++Li L +i+++g++i+ ++ +d+ + ++ e + KIAA1939 158 SIDRLMNTLVLWIFGFLICLGIILAIGNSIWE-SQTGDqFRTFLFWNEGE 206 kseRPGGkdYeYrnaaangFfsfltalILFssLIPISLYVslElvKsvQA ks+ + gF +f+ ++I ++ +PISLYVs+E+++ + + KIAA1939 207 KSS------------VFSGFLTFWSYIIILNTVVPISLYVSVEVIRLGHS 244 tyFInsDlemYhektDtPasvRtSNLnEeLGQVeYiFSDKTGTLTqNiMe yFIn+D+ mY+ Pa++Rt +LnEeLGQ+eYiFSDKTGTLTqNiM+ KIAA1939 245 -YFINWDRKMYYSRKAIPAVARTTTLNEELGQIEYIFSDKTGTLTQNIMT 293 FkKcsIaGvsYgSdgltevkdalrerkgskveeesakvakDknsmlnelk Fk csI+G Yg + ++ + d++ e ++e k + +++++ KIAA1939 294 FKRCSINGRIYG-EVHD-DLDQKTEI-----TQE-----KEPVDFSVKSQ 331 ilksnsqkapkgftFvdprLvkllktaknkpnakliqeFflaLAiCHtVv a +f F d L+ +k ++p + eF+++LA+CHtV KIAA1939 332 --------ADREFQFFDHHLMESIKM--GDPK---VHEFLRLLALCHTVM 368 PevnddddpeKGeitYQAaSPDEaALVkaArdlGFvfieRtpksIsllie e ++ + Ge++YQ +SPDE+ALV+aAr++GF f +Rtp +++ie KIAA1939 369 SE-EN-SA---GELIYQVQSPDEGALVTAARNFGFIFKSRTPE--TITIE 411 erGkkGkkeekeYeiLnVlEFnSdRKRMSvIvRfPdgnPGDdgrilLlcK e G ++Y++L l Fn +RKRMSvIvR+P+g +i+L++K KIAA1939 412 ELG-----TLVTYQLLAFLDFNNTRKRMSVIVRNPEG------QIKLYSK 450 GADsVifkRLssssGsggnqvieeTkeHLenyAsEGLRTLciAyReLsee GAD++ f+ L + + T+ HL +A EGLRTL iAyR+L+++ KIAA1939 451 GADTILFEKLHP----SNEVLLSLTSDHLSEFAGEGLRTLAIAYRDLDDK 496 EYeeWneeYneAstaLtedReekLdevAelIEkdLiLLGaTAIEDKLQeG + eW++ ++A++a +R+e++ e +e IE+dL LLGaTA+EDKLQeG KIAA1939 497 YFKEWHKMLEDANAATE-ERDERIAELYEEIERDLMLLGATAVEDKLQEG 545 VPetIElLreAGIKiWVLTGDKvETAINIGySCrLlsenMe.livIkees V et +L+ A+IKiWVLTGDK+ETAINIGy+C+ l+ +M++++vI + KIAA1939 546 VIETVTSLSLANIKIWVLTGDKQETAINIGYACNMLTDDMNdVFVIAGNN 595 ddIrelEdagdldatervveaaikk.....iLkeyfelegteeefnelkk ++E + +l ++ +++ +++++ +e ++ ++++ + e+++ KIAA1939 596 ----AVEVREELRKAKQNLFGQNRNfsnghVVCEKKQQLELDS-IVEETI 640 dhvpsgnvALvIDGksLkyaLdeeDlekeFLqLAlkCkAViCCRVSPsQK g++AL+I G+sL aL+++ + +L+LA+ Ck+ViCCRV+P+QK KIAA1939 641 ----TGDYALIINGHSLAHALESD-VKNDLLELACMCKTVICCRVTPLQK 685 AdVVkLVKkstGrlskiTLAIGDGANDVSMIQeADVGVGIsGkEGmQAvM A+VV LVKk +++TLAIGDGANDVSMI +A++GVGIsG+EG QAv+ KIAA1939 686 AQVVELVKK---YRNAVTLAIGDGANDVSMIKSAHIGVGISGQEGLQAVL 732 ASDFAIgQFrFLekLLLVHGrWSYkRiskmIlYfFYKNlifalilFWYsf ASD++ +QFr+L +LLLVHGrWSY R++k +YfFYKN +f+l FW++f KIAA1939 733 ASDYSFAQFRYLQRLLLVHGRWSYFRMCKFLCYFFYKNFAFTLVHFWFGF 782 yngFsGqtlyedWymvlYNvfFTalPVivLGvfDqDvsaslslryPqLYr + gFs qt y+ W++ l+N ++T+lPV + G+fDqDvs++ s + PqLY+ KIAA1939 783 FCGFSAQTVYDQWFITLFNIVYTSLPVLAMGIFDQDVSDQNSVDCPQLYK 832 eGqkgkefstkvFwgwmldglyQSlviFffpilayklgdfv.ssG.evdd Gq++ f+ ++F+ +l g+y Slv+Ff+p+ a+ + + +G++++d KIAA1939 833 PGQLNLLFNKRKFFICVLHGIYTSLVLFFIPYGAFYN--VAgEDGqHIAD 880 fssvGvivfTalVvvvnlkiaLeinrWnwisliaiwgSiLvwl..ifv.. + s v++ T+lV+vv ++iaL++ +W+ i +++iwgSi ++++ +f+ + KIAA1939 881 YQSFAVTMATSLVIVVSVQIALDTSYWTFINHVFIWGSIAIYFsiLFTmh 930 ..ivyssifptlPadisrefykaakrvmstfgFWlvLlvivlisLLPrFt ++++ + ifp f + a ++++ Wlv l+++++s P+++ KIAA1939 931 snGIFG-IFP-----NQFPFVGNARHSLTQKCIWLVILLTTVASVMPVVA 974 ykalqrlfrPtdyeiVqE<-* +++l+ ++Pt + +++ KIAA1939 975 FRFLKVDLYPTLSDQIRR 992 TIGR01494: domain 2 of 7, from 208 to 302: score 73.6, E = 1.4e-19 *->iglwtffkiflralillviaiPiaLpvavtia.............la ++++++f +f+ ++i+l+ ++Pi+L+v+v++++ +++ + ++++ KIAA1939 208 SSVFSGFLTFWSYIIILNTVVPISLYVSVEVIrlghsyfinwdrkMY 254 vgdkrmailvrslnalEelGqvdyicsDKTGTLTenkmtfkkvyigge<- ++ k++++++r+ +++EelGq++yi+sDKTGTLT+n mtfk+++i+g+ KIAA1939 255 YSRKAIPAVARTTTLNEELGQIEYIFSDKTGTLTQNIMTFKRCSINGR 302 * KIAA1939 - - TIGR01494: domain 5 of 7, from 532 to 581: score 66.2, E = 1.3e-17 *->llGltaieDpLredvketIeeLkraGikvwMlTGDnveTAiaIAkec llG+ta+eD+L+e+v+et+ L a+ik+w+lTGD++eTAi+I+++c KIAA1939 532 LLGATAVEDKLQEGVIETVTSLSLANIKIWVLTGDKQETAINIGYAC 578 glf<-* +++ KIAA1939 579 NML 581 TIGR01494: domain 6 of 7, from 676 to 783: score 132.1, E = 5.1e-37 *->lfARvsPeqKaeiVellqkrg.aiVamiGDGaNDapALkaADVGiai +++Rv+P+qKa++Vel++k+ +a++++iGDGaND++++k A++G++i KIAA1939 676 ICCRVTPLQKAQVVELVKKYRnAVTLAIGDGANDVSMIKSAHIGVGI 722 g......AkaaaDivltddnlslivlllvhGRwtykrikklilyalyynl +++++ +A+ a+D++++++ ++l +lllvhGRw+y r++k+++y++y+n+ KIAA1939 723 SgqeglqAVLASDYSFAQF-RYLQRLLLVHGRWSYFRMCKFLCYFFYKNF 771 iliillfvlsvi<-* +++++ f++ ++ KIAA1939 772 AFTLVHFWFGFF 783 //