hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17060720/chunk_1/iprscan-20080502-17060720.nocrc
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Query sequence: KIAA1939
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00702.16.fs haloacid dehalogenase-like hydrolase         23.6      2e-06   3
PF08282.2.fs haloacid dehalogenase-like hydrolase         14.4    0.00021   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF08282.2.fs   1/1     700   720 ..   220   240 ..    14.4  0.00021

Alignments of top-scoring domains:
PF08282.2.fs: domain 1 of 1, from 700 to 720: score 14.4, E = 0.00021
                   *->viAFGDgeNDieMLelaGlgV<-*
                      ++A+GDg ND++M++ a +gV   
    KIAA1939   700    TLAIGDGANDVSMIKSAHIGV    720  

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