hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16541512/chunk_1/iprscan-20080502-16541512.nocrc
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Query sequence: KIAA1932
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF03399.6.fs SAC3/GANP/Nin1/mts3/eIF-3 p25 family          205.1    1.5e-58   1
PF03399.6.ls SAC3/GANP/Nin1/mts3/eIF-3 p25 family          204.7      2e-58   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF03399.6.fs   1/1     545   727 ..     1   231 [.   205.1  1.5e-58
PF03399.6.ls   1/1     545   738 ..     1   249 []   204.7    2e-58

Alignments of top-scoring domains:
PF03399.6.fs: domain 1 of 1, from 545 to 727: score 205.1, E = 1.5e-58
                   *->erpnPeeLrplkvLlktldyLvdkildqaeyeaeraWYsfvddrlrs
                       +p P+ +rp +vL+k+l+++   +  +++y       +f + +++s
    KIAA1932   545    CAPDPSTVRPVAVLKKSLCMVKCHWKEKQDY-------AFACEQMKS 584  

                   irqDltvqgvedsitvkdyEsferyHilslarlalEegdeqFDlqqelee
                   irqDltvqg++ ++tv++yE++        ar+alE+gd        +ee
    KIAA1932   585 IRQDLTVQGIRTEFTVEVYETH--------ARIALEKGD--------HEE 618  

                   lnkClgllqLkelYqdlkkkleecpneaefrigynlLyklLaslndpdfh
                   +n+C  + qLk lY++   +l+ +    ef+ +y++Ly ++++ n++d++
    KIAA1932   619 FNQC--QTQLKSLYAE---NLPGNV--GEFT-AYRILY-YIFTKNSGDIT 659  

                   telellDdppkevredpyvktalqLeaalmegnnTEacNLYnkffrllqk
                   tel +l   + e++ dp+v +al+L+ a+  gn       Y++ffrl+  
    KIAA1932   660 TELAYL---TRELKADPCVAHALALRTAWALGN-------YHRFFRLYCH 699  

                   nnqppylcdysclmddifldtiRkealrvisksY<-*
                      +p +   ++l+d +f d++Rk al+++ k+Y   
    KIAA1932   700 ---APCM--SGYLVD-KFADRERKVALKAMIKTY    727  

PF03399.6.ls: domain 1 of 1, from 545 to 738: score 204.7, E = 2e-58
                   *->erpnPeeLrplkvLlktldyLvdkildqaeyeaeraWYsfvddrlrs
                       +p P+ +rp +vL+k+l+++   +  +++y       +f + +++s
    KIAA1932   545    CAPDPSTVRPVAVLKKSLCMVKCHWKEKQDY-------AFACEQMKS 584  

                   irqDltvqgvedsitvkdyEsferyHilslarlalEegdeqFDlqqelee
                   irqDltvqg++ ++tv++yE++        ar+alE+gd        +ee
    KIAA1932   585 IRQDLTVQGIRTEFTVEVYETH--------ARIALEKGD--------HEE 618  

                   lnkClgllqLkelYqdlkkkleecpneaefrigynlLyklLaslndpdfh
                   +n+C  + qLk lY++   +l+ +    ef+ +y++Ly ++++ n++d++
    KIAA1932   619 FNQC--QTQLKSLYAE---NLPGNV--GEFT-AYRILY-YIFTKNSGDIT 659  

                   telellDdppkevredpyvktalqLeaalmegnnTEacNLYnkffrllqk
                   tel +l   + e++ dp+v +al+L+ a+  gn       Y++ffrl+  
    KIAA1932   660 TELAYL---TRELKADPCVAHALALRTAWALGN-------YHRFFRLYCH 699  

                   nnqppylcdysclmddifldtiRkealrvisksYnsrhqkiplkylaelL
                      +p +   ++l+d +f d++Rk al+++ k+Y     ++p ++l   L
    KIAA1932   700 ---APCM--SGYLVD-KFADRERKVALKAMIKTY-----VVPSSLLP--L 736  

                   gf<-*
                   +f   
    KIAA1932   737 LF    738  

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