# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj03131.fasta.huge -Q ../query/KIAA1927.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1927, 1325 aa
 vs ./tmplib.25089 library

1986180 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 11.4881+/-0.00919; mu= -11.9146+/- 0.621
 mean_var=450.6224+/-107.245, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.060418

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0748  ( 472 res)   hk04254                     ( 472)  498 58.4 3.4e-09


>>KIAA0748  ( 472 res)   hk04254                          (472 aa)
 initn: 488 init1: 361 opt: 498  Z-score: 256.9  bits: 58.4 E(): 3.4e-09
Smith-Waterman score: 507;  30.649% identity (60.179% similar) in 447 aa overlap (137-544:6-447)

        110       120       130       140       150        160     
KIAA19 DLSTEATTQDEEEDEEEDLPGAQLPAAGGRGNVPNEKIAIWLKDC-RTPLGASLDEQSSS
                                     :: : .::  ::.::  .  : :  :....
KIAA07                          CLTFLGN-PINKIEDWLQDCGYSEEGFS--EEAGQ
                                         10        20          30  

         170       180       190       200       210       220     
KIAA19 TLKGVLVRNGGSFEDDLSLGAEANHLHESDAQIENCNNILAKERRLQFHQKGRSMNSTG-
        . . .  .: ::::::.:::::. :  ..... .  ..:   :  :. . : :. :.. 
KIAA07 FIYNGFCSHGTSFEDDLTLGAEAT-LLAANGKLFS-RSFLETARPCQLLDLGCSLASSSM
             40        50         60         70        80        90

          230       240       250       260       270       280    
KIAA19 SGKSSGTVSSVSELLELYEEDPEEILYNLGFGRDEPDIASKIPSRFFNSSSFAKGIDIKV
       .: .. : ::.::.:.  .:: :..:..::::...   .:.::.:::.. : :::::...
KIAA07 TGGTNKTSSSISEILDKVQEDAEDVLFSLGFGQEDHKDTSRIPARFFTTPSQAKGIDFQL
              100       110       120       130       140       150

          290       300       310       320       330        340   
KIAA19 FLSAQMQRMEVENPNYALTSRFRQIEVLTTVANAFSSLYSQVSGTPLQRIG-SMSSVTSN
       ::..:..:.:.:.:   :.:::.:...:...:.::  ::: :: ::.:..  :    . :
KIAA07 FLKSQVRRIEMEDPCLMLASRFKQVQTLAVTADAFFCLYSYVSKTPVQKFTPSHMFWNCN
              160       170       180       190       200       210

           350             360       370         380       390     
KIAA19 KETDPPPP--LTR----SNTANRLMKTLSKLNL--CVDKTEKGESSSPSPSAEKGKILNV
       . :: :    :.:    ..  .:: :..::. :  :         ..:. ..    .:.:
KIAA07 HPTDVPSIRILSREPEPQSPRDRLRKAISKMCLYTCPRDRPPPPHNTPKRNSLDQVVLEV
              220       230       240       250       260       270

           400            410            420          430          
KIAA19 --SVIEESG---NKND--QKSQK-----IMKKKESSSMLATV---KEEVSGSSAAV---T
         .: ::.    . .:  : ::.        ::  .:    :   .::..   ..:   .
KIAA07 MDKVKEEKQFLQQDSDLGQFSQEDPVPPAEGKKLPTSPYPCVFCCEEETQQRMSTVLAPS
              280       290       300       310       320       330

       440        450           460       470       480            
KIAA19 ENADSD-RISDEANS----NFNQGTENEQSKETQSHESKLGEESGIVES----KLDSDFN
       .. ::. ..   ..:    . . .:.  : ..        . :.  ...    :  :   
KIAA07 QTLDSNPKVPCCTHSLPIEDPQWSTDPAQIRRELCSLPATNTETHPAKDETFWKRKSRAR
              340       350       360       370       380       390

      490       500       510       520        530       540       
KIAA19 ISSHSELENSSELKSVHISTPEKEPCAPLTIPSIRNIMTQQ-KDSFEMEEVQSTEGEAPH
        :  ..   . ..::. .:  ...    .  : .:  ..:: .:.:..:::::.  :   
KIAA07 KSLFQKNLMGRKVKSLDLSITQQKWKQSVDRPELRRSLSQQPQDTFDLEEVQSNSEEEQS
              400       410       420       430       440       450

       550       560       570       580       590       600       
KIAA19 VPATYQLGLTKSKRDHLLRTASQHSDSSGFAEDSTDCLSLNHLQVQESLQAMGSSADSCD
                                                                   
KIAA07 QSRWPSRPRHPHHHQTFAGKDS                                      
              460       470                                        




1325 residues in 1 query   sequences
1986180 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:22:24 2008 done: Thu Dec 18 15:22:25 2008
 Total Scan time:  0.760 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]