hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16442653/chunk_1/iprscan-20080502-16442653.nocrc
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Query sequence: KIAA1926
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00445                                                 290.6    1.2e-82   2
SM00409                                                  37.6    1.7e-06   1
SM00406                                                  31.9    8.9e-05   1
SM00408                                                  29.2    0.00055   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/1      63   171 ..     1    58 []    37.6  1.7e-06
SM00408    1/1      69   160 ..     1    56 []    29.2  0.00055
SM00406    1/1      73   155 ..     1    76 []    31.9  8.9e-05
SM00445    1/2     171   278 ..     1   107 []   156.5  2.8e-42
SM00445    2/2     282   375 ..     1   107 []   134.1  1.5e-35

Alignments of top-scoring domains:
SM00409: domain 1 of 1, from 63 to 171: score 37.6, E = 1.7e-06
                   *->pp.vtvkeGesvtLtC.as...........titWy............
                      p++v+  +G++++L+C+++     +++++ +++W++  ++   ++  
    KIAA1926    63    PGqVVSHRGGTIVLPCrYHyeaaahghdgvRLKWTkvvdplaftdvf 109  

                   ............................LtI.nvtpeDsesgGtYtCaat
                      +++++  ++ +++   +++++++ +L+++nvt++D    G Y C++t
    KIAA1926   110 valgpqhrafgsyrgraelqgdgpgdasLVLrNVTLQDY---GRYECEVT 156  

                   ..sgsasseqgttLtVl<-*
                   +   ++ +   ++L  +   
    KIAA1926   157 neLEDDAG--MVKLDLE    171  

SM00408: domain 1 of 1, from 69 to 160: score 29.2, E = 0.00055
                   *->leGqsVtLtC......pasgdpvpnItWlk.gkplp...........
                      + G++++L+C+ + +  a g ++   +W+k   pl+ ++     +++
    KIAA1926    69    HRGGTIVLPCryhyeaAAHGHDGVRLKWTKvVDPLAftdvfvalgpq 115  

                   ..................sgstLtiknvsleDsGlYtCvArNsvg<-*
                   ++  ++ +++ + +++++++ +L ++nv+l D G+Y+C+++N+     
    KIAA1926   116 hrafgsyrgraelqgdgpGDASLVLRNVTLQDYGRYECEVTNELE    160  

SM00406: domain 1 of 1, from 73 to 155: score 31.9, E = 8.9e-05
                   *->svtLsCkaSgftf.......yvsWvrqpPsstgkgkglewlgy....
                      ++ L+C+++     +++++  + W +     +       +++  +++
    KIAA1926    73    TIVLPCRYHYEAAahghdgvRLKWTKVVD--P--LAFTDVFVAlgpq 115  

                   .....sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-*
                   ++  +sy+gR ++ +d     + +d+sL+++n++  D g+Y C++   
    KIAA1926   116 hrafgSYRGRAELQGD-----GPGDASLVLRNVTLQDYGRYECEV    155  

SM00445: domain 1 of 2, from 171 to 278: score 156.5, E = 2.8e-42
                   *->dGgVFhlearnGrykLtFaEAreaCeaqGArLAtvgQLyaAwkglGF
                      +G+VF++ +r GrykLtFaEA++aC +q++ LA+++QL+aAw++ G+
    KIAA1926   171    EGVVFPYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHAAWRD-GL 216  

                   dqCdaGWLaDGsVrYPIvtPrprCGg.........DsdglpGVRtVYlfa
                   d+C+aGWL DGsV+YP+ +Pr++CGg +++++ +++ d + G R+     
    KIAA1926   217 DWCNAGWLRDGSVQYPVNRPREPCGGlggtgsaggGGDANGGLRN----- 261  

                   NQyGfpdpdserYDAYCFr<-*
                     yG++ + +erYDA+CF+   
    KIAA1926   262 --YGYRHNAEERYDAFCFT    278  

SM00445: domain 2 of 2, from 282 to 375: score 134.1, E = 1.5e-35
                   *->dGgVFhlearnGrykLtFaEAreaCeaqGArLAtvgQLyaAwkglGF
                       G+VF+l +    +   F++A++aC a+GA  A+vgQL+aAwk+  +
    KIAA1926   282    PGRVFFLKP---LRPVPFSGAARACAARGAAVAKVGQLFAAWKLQLL 325  

                   dqCdaGWLaDGsVrYPIvtPrprCGgDsdglpGVRtVYlfaNQyGfpdpd
                   d+C+aGWLaDGs rYPIv+Pr+rCGg    +pGVR+       +Gfpd +
    KIAA1926   326 DRCTAGWLADGSARYPIVNPRARCGG---RRPGVRS-------LGFPDAT 365  

                   serYDAYCFr<-*
                    +++++YC+r   
    KIAA1926   366 RRLFGVYCYR    375  

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