# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh10052.fasta.huge -Q ../query/KIAA1926.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1926, 412 aa
 vs ./tmplib.25089 library

1987093 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.9739+/-0.00583; mu= 13.9821+/- 0.397
 mean_var=121.7848+/-28.642, 0's: 0 Z-trim: 4  B-trim: 4 in 1/39
 Lambda= 0.116219

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0246  ( 2589 res)   ef02679                    (2589)  197 45.0 6.2e-05


>>KIAA0246  ( 2589 res)   ef02679                         (2589 aa)
 initn: 415 init1: 190 opt: 197  Z-score: 180.4  bits: 45.0 E(): 6.2e-05
Smith-Waterman score: 230;  39.423% identity (57.692% similar) in 104 aa overlap (174-277:2228-2319)

           150       160       170       180       190       200   
KIAA19 TLQDYGRYECEVTNELEDDAGMVKLDLEGVVFPYHPRGGRYKLTFAEAQRACAEQDGILA
                                     ::  .  .: : :.:.::. ::  : ..::
KIAA02 PPVDRCLGQPPPCHSDAMCTDLHFQEKRAGVFHLQATSGPYGLNFSEAEAACEAQGAVLA
      2200      2210      2220      2230      2240      2250       

           210       220       230       240       250       260   
KIAA19 SAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLGGTGSAGGGGDANGGLRNYG
       :  :: :: . :.  :  ::: .::. .::  :   ::.    : .:        . . :
KIAA02 SFPQLSAAQQLGFHLCLMGWLANGSTAHPVVFPVADCGN----GRVG--------IVSLG
      2260      2270      2280      2290          2300             

           270       280       290       300       310       320   
KIAA19 YRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSGAARACAARGAAVAKVGQLFAAWKLQ
        :.:  ::.::.::                                              
KIAA02 ARKNLSERWDAYCFRVQDVACRCRNGFVGDGISTCNGKLLDVLAATANFSTFYGMLLGYA
        2310      2320      2330      2340      2350      2360     




412 residues in 1 query   sequences
1987093 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:22:22 2008 done: Thu Dec 18 15:22:22 2008
 Total Scan time:  0.390 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]