hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16392532/chunk_1/iprscan-20080502-16392532.nocrc
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Query sequence: KIAA1923
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00591                                                  68.9    6.5e-16   1
SM00320                                                  57.5    1.7e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/2      38    78 ..     1    46 []    40.1    3e-07
SM00320    2/2     129   173 ..     1    46 []    17.4     0.86
SM00591    1/1     251   352 ..     1   128 []    68.9  6.5e-16

Alignments of top-scoring domains:
SM00320: domain 1 of 2, from 38 to 78: score 40.1, E = 3e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ +  l +H +   +++++++pd+     +++la++s+D+++++W
    KIAA1923    38    PsTAVEYLAAHLS--KIHGLDWHPDS-----EHILATSSqDNSVKFW 77   

                   d<-*
                   d   
    KIAA1923    78 D    78   

SM00320: domain 2 of 2, from 129 to 173: score 17.4, E = 0.86
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +++++t+ gH++   V+  ++    ++++++ +l++ s+D t+r+W
    KIAA1923   129    LnTPVHTFVGHDD--VVLEFQWRKQ-KEGSKDYQLVTWSrDQTLRMW 172  

                   d<-*
                       
    KIAA1923   173 R    173  

SM00591: domain 1 of 1, from 251 to 352: score 68.9, E = 6.5e-16
                   *->eEleaLesIYped.fevieedaspnvsnreitiklspeedeesitsk
                      +E + +    +++++e+ ++d+s     + + +++s ++        
    KIAA1923   251    QEFSLINVQIRNVnVEMDAADRS-----CTVSVHCSNHR-------- 284  

                   snvlegedqyvsltLqvklPenYPd.eaPpifllssekglsdeqlkkaeL
                               +++ vk+P++YP+++aP ++++++  +++ +++  a+L
    KIAA1923   285 ------------VKMLVKFPAQYPNnSAPSFQFINPT-TITSTMK--AKL 319  

                   lkkLqeiaeenellGevmifelveklqeflseh<-*
                   lk+L+++a + +++G+ ++ ++++ l ++l+++   
    KIAA1923   320 LKILKDTALQKVKRGQSCLEPCLRQLVSCLESF    352  

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