hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16392532/chunk_1/iprscan-20080502-16392532.nocrc
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Query sequence: KIAA1923
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.fs WD domain, G-beta repeat                        61.6    2.2e-16   3
PF00400.22.ls WD domain, G-beta repeat                        58.1    2.7e-14   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   2/3      39    78 ..     1    38 []    35.3  5.6e-09
PF00400.22.ls   1/2      39    78 ..     1    38 []    37.3  4.9e-08
PF00400.22.fs   3/3     130   173 ..     1    38 []    18.8  0.00025

Alignments of top-scoring domains:
PF00400.22.fs: domain 2 of 3, from 39 to 78: score 35.3, E = 5.6e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + +  l +H s +  ++++pds ++la++S D+++k Wd   
    KIAA1923    39    STAVeYLaAHLSKIHGLDWHPDSEHILATSSQDNSVKFWD    78   

PF00400.22.ls: domain 1 of 2, from 39 to 78: score 37.3, E = 4.9e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + +  l +H s +  ++++pds ++la++S D+++k Wd   
    KIAA1923    39    STAVeYLaAHLSKIHGLDWHPDSEHILATSSQDNSVKFWD    78   

PF00400.22.fs: domain 3 of 3, from 130 to 173: score 18.8, E = 0.00025
                   *->geck.vl.gHtstVtcvafspd....sgpllasgSrDgtikiWd<-*
                       ++++++ gH + V    +   ++++   +l++ SrD t+++W    
    KIAA1923   130    NTPVhTFvGHDDVVLEFQWRKQkegsKDYQLVTWSRDQTLRMWR    173  

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