# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh11169.fasta.huge -Q ../query/KIAA1922.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1922, 370 aa
 vs ./tmplib.25089 library

1987135 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 11.3348+/-0.00989; mu= -17.4710+/- 0.664
 mean_var=449.2272+/-109.976, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.060512

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0445  ( 1919 res)   hg00102s1                  (1919) 1449 140.8 5.9e-34


>>KIAA0445  ( 1919 res)   hg00102s1                       (1919 aa)
 initn: 1446 init1: 1446 opt: 1449  Z-score: 701.5  bits: 140.8 E(): 5.9e-34
Smith-Waterman score: 1449;  91.732% identity (97.244% similar) in 254 aa overlap (10-262:366-619)

                                    10        20        30         
KIAA19                      GTWHSPSCRTQSGVQLSGSKRTADDSFGSLRGLSAQQTP
                                     ..::::::::.:::: : :::::::.:.::
KIAA04 RLQEQAALETEDGEGLQQTLRDLAQAVLSDSESGVQLSGSERTADASNGSLRGLSGQRTP
         340       350       360       370       380       390     

      40        50        60        70        80        90         
KIAA19 SPPRRSSPGRGRSPRRGPSPACSDSSTLALIHSTLHKHELQVQDMRGRYEASQDLLGTLR
       :::::::::::::::::::::::::::::::::.:::..:::::::::::::::::::::
KIAA04 SPPRRSSPGRGRSPRRGPSPACSDSSTLALIHSALHKRQLQVQDMRGRYEASQDLLGTLR
         400       410       420       430       440       450     

     100       110       120       130       140       150         
KIAA19 KQLSDSESERRALEEQLQRLRDKTDSTMQAHEDAQREVQRLRSAKELLRREKSNLAHSLQ
       :::::::::::::::::::::::::..:::::::::::::::::.::: :::::::::::
KIAA04 KQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQ
         460       470       480       490       500       510     

     160       170       180       190       200       210         
KIAA19 VAQQQAKELRQERKKLQAAQEELRRQRYWLGEEQEDAVQDGVRVRRELERSHRQLEQLEG
       ::::::.::::::.:::::::::::::  : ::::::::::.::::::::::::::::::
KIAA04 VAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEG
         520       530       540       550       560       570     

     220       230       240       250       260        270        
KIAA19 KRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAE-GRGGLPAGLPVQAERPQR
       ::::::::::::::::::::::::::::::::::::::::: ::                
KIAA04 KRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEAS
         580       590       600       610       620       630     

      280       290       300       310       320       330        
KIAA19 EPCSGQVGSEPPCHPGHSWRKKSAPCRAGSGRRSRRPQWHGKSRSGWRRCGWNRRWRGRA
                                                                   
KIAA04 LQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEEL
         640       650       660       670       680       690     




370 residues in 1 query   sequences
1987135 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:22:13 2008 done: Thu Dec 18 15:22:14 2008
 Total Scan time:  0.380 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]