# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj01313.fasta.huge -Q ../query/KIAA1918.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1918, 516 aa
 vs ./tmplib.25089 library

1986989 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.4029+/-0.00418; mu= 15.1669+/- 0.286
 mean_var=70.6604+/-16.980, 0's: 0 Z-trim: 2  B-trim: 2 in 1/39
 Lambda= 0.152576

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1130  ( 575 res)   hh00715                     ( 575) 1253 285.3 7.8e-78


>>KIAA1130  ( 575 res)   hh00715                          (575 aa)
 initn: 1208 init1: 600 opt: 1253  Z-score: 1489.3  bits: 285.3 E(): 7.8e-78
Smith-Waterman score: 1253;  44.570% identity (71.041% similar) in 442 aa overlap (38-464:119-547)

        10        20        30        40        50        60       
KIAA19 AVISRNQEGPGEMGKAVLIPKDDQEKMKELFKINQFNLMASDLIALNRSLPDVRLEGCKT
                                     .. . :: . :: .. .: . :.:  .: .
KIAA11 IPLIVTGTPSKGFDEKAYLSAKQLKAGEDPYRQHAFNQLESDKLSPDRPIRDTRHYSCPS
       90       100       110       120       130       140        

        70        80        90       100       110         120     
KIAA19 KVYPDELPNTSVVIVFHNEAWSTLLRTVYSVINRSPHYLLSEVILVDDASE--RDFLKLT
         : ..:: :::.:.::::: ::::::: ::.::.:  :..:.::::: :   .: : ::
KIAA11 VSYSSDLPATSVIITFHNEARSTLLRTVKSVLNRTPANLIQEIILVDDFSSDPEDCLLLT
      150       160       170       180       190       200        

         130        140       150       160       170       180    
KIAA19 LENYVKNLEVP-VKIIRMEERSGLIRARLRGAAASKGQVITFLDAHCECTLGWLEPLLAR
               ..: :: .: ..: ::::.:.::: .. . :.::::.::: .  :: :.: :
KIAA11 --------RIPKVKCLRNDRREGLIRSRVRGADVAAATVLTFLDSHCEVNTEWLPPMLQR
              210       220       230       240       250       260

          190       200       210       220       230        240   
KIAA19 IKEDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVP-QREMDRRKGDRTL
       .:::.  :: ::::::: :.: :.:.:    :::.:.:.:.:  .: ...: :   : : 
KIAA11 VKEDHTRVVSPIIDVISLDNFAYLAASADLRGGFDWSLHFKWEQIPLEQKMTRT--DPTR
              270       280       290       300       310          

           250       260       270       280       290       300   
KIAA19 PVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLEIVTCSHVGH
       :.:::..:::.: ::...:...: ::: ::::::::.:.:::.:.:::::::: ::.:::
KIAA11 PIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENFELSFRVWMCGGSLEIVPCSRVGH
      320       330       340       350       360       370        

           310       320       330       340       350       360   
KIAA19 VFRKATPYTFPGGTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDYGDVSVRKTLRE
       ::::  ::.:: :.. .  .:..: :::::::.:...:   :...   .:.:..:   :.
KIAA11 VFRKRHPYNFPEGNALTYIRNTKRTAEVWMDEYKQYYYEARPSAIGKAFGSVATRIEQRK
      380       390       400       410       420       430        

           370       380       390       400         410       420 
KIAA19 NLKCKPFSWYLENIYPDSQIPRRYYSLGEIRNVETNQCLDNMGRKE--NEKVGIFNCHGM
       ...:: : :::::.::.  .: .    : :.  .  .::...:..   .  .:.  :.: 
KIAA11 KMNCKSFRWYLENVYPELTVPVKEALPGIIK--QGVNCLESQGQNTAGDFLLGMGICRGS
      440       450       460         470       480       490      

                 430       440            450       460       470  
KIAA19 GGN----QVFSYTADKEIRTDDLCLD-----VSRLNGPVIMLKCHHMRGNQLWEYDAERL
       . :    :.. .. :. :. .  ::      .:  ..:::.  :.  .:.:.        
KIAA11 AKNPQPAQAWLFS-DHLIQQQGKCLAATSTLMSSPGSPVILQMCNPREGKQVSLLASGPE
        500        510       520       530       540       550     

            480       490       500       510      
KIAA19 TLRHVNSNQCLDEPSEEDKMVPTMQDCSGSRSQQWLLRNMTLGT
                                                   
KIAA11 AQQPEGPCLRVADLGRRAPD                        
         560       570                             




516 residues in 1 query   sequences
1986989 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:22:05 2008 done: Thu Dec 18 15:22:05 2008
 Total Scan time:  0.450 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]