hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16292661/chunk_1/iprscan-20080502-16292661.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1917 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00097.15.fs Zinc finger, C3HC4 type (RING finger) 16.2 2.2e-05 1 PF00097.15.ls Zinc finger, C3HC4 type (RING finger) 18.0 0.002 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00097.15.fs 1/1 300 338 .. 1 50 [] 16.2 2.2e-05 PF00097.15.ls 1/1 300 338 .. 1 50 [] 18.0 0.002 Alignments of top-scoring domains: PF00097.15.fs: domain 1 of 1, from 300 to 338: score 16.2, E = 2.2e-05 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC C +Cl + ilpC+H + C +C + ++C KIAA1917 300 CVVCLSDVRDTL-----ILPCRHL----CLCNTCADTLRY--QANNC 335 plC<-* p+C KIAA1917 336 PIC 338 PF00097.15.ls: domain 1 of 1, from 300 to 338: score 18.0, E = 0.002 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC C +Cl + ilpC+H + C +C + ++C KIAA1917 300 CVVCLSDVRDTL-----ILPCRHL----CLCNTCADTLRY--QANNC 335 plC<-* p+C KIAA1917 336 PIC 338 //