# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fk00028.fasta.huge -Q ../query/KIAA1917.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1917, 702 aa
 vs ./tmplib.25089 library

1986803 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.8251+/- 0.007; mu= 3.7227+/- 0.473
 mean_var=247.4536+/-59.934, 0's: 0 Z-trim: 4  B-trim: 154 in 1/39
 Lambda= 0.081532

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0544  ( 583 res)   hg04431                     ( 583) 1758 220.0 5.1e-58


>>KIAA0544  ( 583 res)   hg04431                          (583 aa)
 initn: 1944 init1: 1003 opt: 1758  Z-score: 1133.5  bits: 220.0 E(): 5.1e-58
Smith-Waterman score: 1874;  57.353% identity (75.735% similar) in 544 aa overlap (19-531:27-557)

                       10        20        30        40        50  
KIAA19         AAAVKRGGRRGHRGRAGAAAAAAMGALTSRQHAGVEEVDIPSNSVYRYPPKS
                                 ::  .::.. ::. ::::..:: .::.:::::::
KIAA05 RPGPGHVRVRTPPLSPLPFRPWPLCPAARRTMGSILSRRIAGVEDIDIQANSAYRYPPKS
               10        20        30        40        50        60

             60        70        80        90       100       110  
KIAA19 GSYFASHFIMGGEKFDSTHPEGYLFGENSDLNFLGNRPVVFPYAAPPPQEPVKTLRSLVN
       :.::::::.:::::::. :::::::::: ::::::.::: :::..: :.:::::::::::
KIAA05 GNYFASHFFMGGEKFDTPHPEGYLFGENMDLNFLGSRPVQFPYVTPAPHEPVKTLRSLVN
               70        80        90       100       110       120

            120       130       140       150       160       170  
KIAA19 IRKDTLRLVKCAEEVKSPGEEASKAKVHYNVEFTFDTDARVAITIYYQATEEFQNGIASY
       ::::.::::.  ... :: :...: .: :..:::::.::::::::: ::.::: :: : :
KIAA05 IRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADARVAITIYCQASEEFLNGRAVY
              130       140       150       160       170       180

            180       190       200       210       220       230  
KIAA19 IPKDNSLQSETVQYKRGVCQQFCLPSHTVDPSEWAEEELGFDLDREVYPLVVHAVVDEGD
        ::. :::::::.::::: ::: :::  .: ::: ..::.::::: :.:.:..:::::::
KIAA05 SPKSPSLQSETVHYKRGVSQQFSLPSFKIDFSEWKDDELNFDLDRGVFPVVIQAVVDEGD
              190       200       210       220       230       240

              240       250       260       270       280       290
KIAA19 --EYFGHCHVLLGTFEKHTDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAE
         :  :: ::::..:::: ::.: ::::::::.:: :::::::::::::: :.:..: ..
KIAA05 VVEVTGHAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVSYLLQEIYGIENK-NNQETKPSD
              250       260       270       280       290          

              300       310       320       330       340       350
KIAA19 DEVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIRA
       :: :::: ::::::::.::::::::::::::..:::::::::::::::::::::::::::
KIAA05 DENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRA
     300       310       320       330       340       350         

              360        370               380                     
KIAA19 MRKKLGPLSPTSFNPIIS-SQTSD--------SEEHPSS------------ENIPPGYEV
       .::: : :::.::.:... :   :        :. ::.:            ...::::: 
KIAA05 VRKKPGALSPVSFSPVLAQSLEHDEHSCPFKKSKPHPASLASKKPKRETNSDSVPPGYEP
     360       370       380       390       400       410         

     390       400       410       420       430       440         
KIAA19 VSLLEALNGPLTPSPAVPPLHVLGDGHLSGMLPSYGSDGHLPPVRTISPLDRLSDSSSQ-
       .::::::::  . :::.:   .  .   ::.     :::       .. .:.. ::: : 
KIAA05 ISLLEALNGLRAVSPAIPSAPLYEEITYSGI-----SDGLSQASCPLAAIDHILDSSRQK
     420       430       440       450            460       470    

      450       460       470       480         490       500      
KIAA19 GLKLKKSLSKSTSQNSSVLHEEEDEHSCSESETQLSQRPSV--QHLGEECGVTPES---E
       :   .:. ...  . :: .::: ::.. ::.   ..  : .   .:. . . .:::   :
KIAA05 GRPQSKAPDSTLRSPSSPIHEE-DEEKLSED---VDAPPPLGGAELALRESSSPESFITE
          480       490        500          510       520       530

           510       520         530       540       550       560 
KIAA19 NLTLSSSGAIDQSSCTGTPLSSTI--SSPEGPASSSLAQSVMSMASSQISTDTVSSMSGS
       ..  :::    :..  .. . ...  ::::                              
KIAA05 EVDESSS---PQQGTRAASIENVLQDSSPEHCGRGPPADIYLPALGPDSCSVGIDE    
                 540       550       560       570       580       




702 residues in 1 query   sequences
1986803 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:22:02 2008 done: Thu Dec 18 15:22:03 2008
 Total Scan time:  0.570 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]