hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16274831/chunk_1/iprscan-20080502-16274831.nocrc
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Query sequence: KIAA1916
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03736.7.ls EPTP domain                                    190.3    4.2e-54   3
PF03736.7.fs EPTP domain                                    185.1    1.5e-52   3
PF00560.23.ls Leucine Rich Repeat                             51.8    2.1e-12   5
PF00560.23.fs Leucine Rich Repeat                             42.5    1.4e-10   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   2/5      83   105 ..     1    24 []    12.1      1.5
PF00560.23.ls   3/5     107   129 ..     1    24 []    14.5     0.35
PF00560.23.fs   3/5     107   129 ..     1    24 []    12.7    0.021
PF00560.23.fs   4/5     131   153 ..     1    24 []    13.9   0.0092
PF00560.23.ls   4/5     131   153 ..     1    24 []    15.8     0.14
PF03736.7.fs   1/3     217   257 ..     1    44 []    88.7  1.7e-23
PF03736.7.ls   1/3     217   257 ..     1    44 []    90.6  4.5e-24
PF03736.7.ls   2/3     405   446 ..     1    44 []    91.2    3e-24
PF03736.7.fs   2/3     405   446 ..     1    44 []    89.3  1.1e-23

Alignments of top-scoring domains:
PF00560.23.ls: domain 2 of 5, from 83 to 105: score 12.1, E = 1.5
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L+ L L++ N s+t  + ++++ +l   
    KIAA1916    83    SLQLLLLNS-N-SFT-IIRDDaFaGL    105  

PF00560.23.ls: domain 3 of 5, from 107 to 129: score 14.5, E = 0.35
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +Le+L ++g N +++ +++ +++++l   
    KIAA1916   107    HLEYLFIEG-N-KIE-TISRNaFrGL    129  

PF00560.23.fs: domain 3 of 5, from 107 to 129: score 12.7, E = 0.021
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +Le+L ++g N +++ +++ +++++l   
    KIAA1916   107    HLEYLFIEG-N-KIE-TISRNaFrGL    129  

PF00560.23.fs: domain 4 of 5, from 131 to 153: score 13.9, E = 0.0092
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L++L+L + N ++ + lp + +++l   
    KIAA1916   131    DLTHLSLAN-N-HI-KALPRDvFsDL    153  

PF00560.23.ls: domain 4 of 5, from 131 to 153: score 15.8, E = 0.14
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L++L+L + N ++ + lp + +++l   
    KIAA1916   131    DLTHLSLAN-N-HI-KALPRDvFsDL    153  

PF03736.7.fs: domain 1 of 3, from 217 to 257: score 88.7, E = 1.7e-23
                   *->FvlhqdlPnvedvlavkhFsaggDvYLaLaqpigrldSlvlrWd<-*
                      Fv+hq+lP  +++++v++F++++DvY+a+aqp+++ +++vl+Wd   
    KIAA1916   217    FVVHQTLP--YQSVSVDTFNSKNDVYVAIAQPSME-NCMVLEWD    257  

PF03736.7.ls: domain 1 of 3, from 217 to 257: score 90.6, E = 4.5e-24
                   *->FvlhqdlPnvedvlavkhFsaggDvYLaLaqpigrldSlvlrWd<-*
                      Fv+hq+lP  +++++v++F++++DvY+a+aqp+++ +++vl+Wd   
    KIAA1916   217    FVVHQTLP--YQSVSVDTFNSKNDVYVAIAQPSME-NCMVLEWD    257  

PF03736.7.ls: domain 2 of 3, from 405 to 446: score 91.2, E = 3e-24
                   *->FvlhqdlPnvedvlavkhFsaggDvYLaLaqpigrldSlvlrWd<-*
                      Fv+h+d+Pn+edvlavk+F++++++YL+L+++ig  dS+v+rW+   
    KIAA1916   405    FVPHGDIPNMEDVLAVKSFRMQNTLYLSLTRFIG--DSRVMRWN    446  

PF03736.7.fs: domain 2 of 3, from 405 to 446: score 89.3, E = 1.1e-23
                   *->FvlhqdlPnvedvlavkhFsaggDvYLaLaqpigrldSlvlrWd<-*
                      Fv+h+d+Pn+edvlavk+F++++++YL+L+++ig  dS+v+rW+   
    KIAA1916   405    FVPHGDIPNMEDVLAVKSFRMQNTLYLSLTRFIG--DSRVMRWN    446  

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