hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16261153/chunk_1/iprscan-20080502-16261153.nocrc
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Query sequence: KIAA1915
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00249.21.fs   Myb-like DNA-binding domain              49.9    1.2e-12   1
PF00249.21.ls   Myb-like DNA-binding domain              51.6    2.4e-12   1
PF01398.11.fs   Mov34/MPN/PAD-1 family                   45.2    1.3e-11   1
PF01398.11.ls   Mov34/MPN/PAD-1 family                   47.2    5.1e-11   1
PF04433.7.fs    SWIRM domain                             37.5    2.1e-09   1
PF04433.7.ls    SWIRM domain                             39.5    1.1e-08   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00249.21.ls     1/1      16    61 ..     1    65 []    51.6  2.4e-12
PF00249.21.fs     1/1      16    61 ..     1    65 []    49.9  1.2e-12
PF04433.7.fs      1/1     270   359 ..     1    95 []    37.5  2.1e-09
PF04433.7.ls      1/1     270   359 ..     1    95 []    39.5  1.1e-08
PF01398.11.fs     1/1     470   580 ..     1   120 []    45.2  1.3e-11
PF01398.11.ls     1/1     470   580 ..     1   120 []    47.2  5.1e-11

Alignments of top-scoring domains:
PF00249.21.ls: domain 1 of 1, from 16 to 61: score 51.6, E = 2.4e-12
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++Wt eE+el++++++k+G +           W kI++++g     
    KIAA1915    16    SVKWTIEEKELFEQGLAKFGRR-----------WTKISKLIG----- 46   

                   nvlgrtaeqcklryykyk<-*
                      +rt+ q+k++ ++y+   
    KIAA1915    47 ---SRTVLQVKSYARQYF    61   

PF00249.21.fs: domain 1 of 1, from 16 to 61: score 49.9, E = 1.2e-12
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++Wt eE+el++++++k+G +           W kI++++g     
    KIAA1915    16    SVKWTIEEKELFEQGLAKFGRR-----------WTKISKLIG----- 46   

                   nvlgrtaeqcklryykyk<-*
                      +rt+ q+k++ ++y+   
    KIAA1915    47 ---SRTVLQVKSYARQYF    61   

PF04433.7.fs: domain 1 of 1, from 270 to 359: score 37.5, E = 2.1e-09
                   *->lkeasyaswldlsaltpiEllsepEfflgktlsgrktpevYLviRns
                      lk ++ +  +d + + + E++  pEff+g++    ktpe YL iRn 
    KIAA1915   270    LKPPEQEIEIDRNIIQEEEKQAIPEFFEGRQA---KTPERYLKIRNY 313  

                   iislwrlnptkyltktdarrnlagpfnsDvnlvsrvydFLerwGyINy<-
                   i+++w++ + kyl kt +r  l+     Dvn + r++ +Le  G IN+  
    KIAA1915   314 ILDQWEICKPKYLNKTSVRPGLKNCG--DVNCIGRIHTYLELIGAINF   359  

                   *
                    
    KIAA1915     -   -    

PF04433.7.ls: domain 1 of 1, from 270 to 359: score 39.5, E = 1.1e-08
                   *->lkeasyaswldlsaltpiEllsepEfflgktlsgrktpevYLviRns
                      lk ++ +  +d + + + E++  pEff+g++    ktpe YL iRn 
    KIAA1915   270    LKPPEQEIEIDRNIIQEEEKQAIPEFFEGRQA---KTPERYLKIRNY 313  

                   iislwrlnptkyltktdarrnlagpfnsDvnlvsrvydFLerwGyINy<-
                   i+++w++ + kyl kt +r  l+     Dvn + r++ +Le  G IN+  
    KIAA1915   314 ILDQWEICKPKYLNKTSVRPGLKNCG--DVNCIGRIHTYLELIGAINF   359  

                   *
                    
    KIAA1915     -   -    

PF01398.11.fs: domain 1 of 1, from 470 to 580: score 45.2, E = 1.3e-11
                   *->ssvrtVvihplVllkivdharrggkskeevmGvLlGtlegdgrviei
                      + + +V++ +++ll +  ha  ++++   v+G+L G++++ ++v+e+
    KIAA1915   470    QEPFQVKVASEALLIMDLHAHVSMAE---VIGLLGGRYSEVDKVVEV 513  

                   tnsFalPqeeteddveaveldqeYmekmlemlkkvngrpeevVGWYHshp
                       + ++  t  ++e++ + q    + +e l     r + v+GWYHshp
    KIAA1915   514 CAAEPCNSLSTGLQCEMDPVSQT---QASETLA---VRGFSVIGWYHSHP 557  

                   glgcwlsavDvhthelyqryipe<-*
                    +++ +s  D++t+++yq y  +   
    KIAA1915   558 AFDPNPSLRDIDTQAKYQSYFSR    580  

PF01398.11.ls: domain 1 of 1, from 470 to 580: score 47.2, E = 5.1e-11
                   *->ssvrtVvihplVllkivdharrggkskeevmGvLlGtlegdgrviei
                      + + +V++ +++ll +  ha  ++++   v+G+L G++++ ++v+e+
    KIAA1915   470    QEPFQVKVASEALLIMDLHAHVSMAE---VIGLLGGRYSEVDKVVEV 513  

                   tnsFalPqeeteddveaveldqeYmekmlemlkkvngrpeevVGWYHshp
                       + ++  t  ++e++ + q    + +e l     r + v+GWYHshp
    KIAA1915   514 CAAEPCNSLSTGLQCEMDPVSQT---QASETLA---VRGFSVIGWYHSHP 557  

                   glgcwlsavDvhthelyqryipe<-*
                    +++ +s  D++t+++yq y  +   
    KIAA1915   558 AFDPNPSLRDIDTQAKYQSYFSR    580  

//