# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hf00664.fasta.huge -Q ../query/KIAA1915.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1915, 726 aa
 vs ./tmplib.25089 library

1986779 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.3748+/-0.00555; mu= 7.1485+/- 0.376
 mean_var=119.7442+/-28.381, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.117205

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1047  ( 2348 res)   hh01221s1                  (2348)  168 40.4  0.0024


>>KIAA1047  ( 2348 res)   hh01221s1                       (2348 aa)
 initn: 165 init1: 108 opt: 168  Z-score: 151.8  bits: 40.4 E(): 0.0024
Smith-Waterman score: 178;  21.695% identity (55.254% similar) in 295 aa overlap (10-294:631-899)

                                    10        20        30         
KIAA19                      RHVTGVHSPTKPASYSVKWTIEEKELFEQGLAKFGRRWT
                                     :.:.  : .:: :: :. ..::.. :: :.
KIAA10 TNEAAAASAAAAAATEEPPPPLPPPPEPISTEPVETS-RWTEEEMEVAKKGLVEHGRNWA
              610       620       630        640       650         

      40        50        60        70        80        90         
KIAA19 KISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKTGHNLQVKNEDKGTKAWTPSCL
        :.:..:...  : :..   ::. : . .::          ::  ....: ..   :   
KIAA10 AIAKMVGTKSEAQCKNF---YFNYKRRHNLD----------NLLQQHKQKTSR--KPREE
     660       670          680                 690         700    

     100       110       120       130       140       150         
KIAA19 RGRADPNLNAVKIEKLSDDEEVDITDEVDELSSQTPQKNSSSDLLLDFPNSKMHETNQGE
       :  .. .  :  . . ..::... ..: ..  ..   .:::.      : : .. .. .:
KIAA10 RDVSQCESVASTV-SAQEDEDIEASNEEENPEDSEGAENSSDTESAPSP-SPVEAVKPSE
          710        720       730       740       750        760  

     160       170        180       190       200         210      
KIAA19 FIASDSQEALFSK-SSRGCLQNEKQDETLSSSEITLWTEKQSNGDKKSIE--LNDQKFNE
           :: :   :. ...  .. :   ::  :.  .: . . . .. .:.:  .::.   :
KIAA10 ----DSPENATSRGNTEPAVELEPTTETAPSTSPSLAVPSTKPAEDESVETQVNDSISAE
                770       780       790       800       810        

        220            230       240       250       260       270 
KIAA19 LIKNCN----KHDGR-GIIVDARQLPSPEPCEIQKNLNDNEMLFHSCQMVEESHEEEELK
         .. .    .:... : . :     . .  ...  . .:    :. ..  .. .:..: 
KIAA10 TAEQMDVDQQEHSAEEGSVCDPPPATKADSVDVEVRVPEN----HASKVEGDNTKERDLD
      820       830       840       850           860       870    

              280       290        300       310       320         
KIAA19 PPEQEIEI-DRNIIQEEEKQAI-PEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKT
          ...:  :....  .. .:  ::                                   
KIAA10 RASEKVEPRDEDLVVAQQINAQRPEPQSDNDSSATCSADEDVDGEPERQRMFPMDSKPSL
          880       890       900       910       920       930    




726 residues in 1 query   sequences
1986779 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:21:58 2008 done: Thu Dec 18 15:21:59 2008
 Total Scan time:  0.560 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]