# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj02022.fasta.huge -Q ../query/KIAA1911.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1911, 864 aa
 vs ./tmplib.25089 library

1986641 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.9214+/-0.00773; mu= 1.9499+/- 0.523
 mean_var=244.2070+/-60.442, 0's: 0 Z-trim: 4  B-trim: 80 in 1/39
 Lambda= 0.082072

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0845  ( 1034 res)   hk05234s1                  (1034)  201 37.7  0.0084


>>KIAA0845  ( 1034 res)   hk05234s1                       (1034 aa)
 initn: 142 init1:  61 opt: 201  Z-score: 142.2  bits: 37.7 E(): 0.0084
Smith-Waterman score: 228;  21.711% identity (53.509% similar) in 456 aa overlap (2-438:592-1024)

                                            10        20        30 
KIAA19                              SAFTPTRTQKSSSKLLRKESHYSGMMSIQEK
                                     : .:.. . .:    . .:  ..   ..:.
KIAA08 AKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPA--EAKSPEKAKSPVKEE
             570       580       590       600         610         

              40        50        60        70        80        90 
KIAA19 SKENSSKVTKKSDDKNSETEIQDSQKNLAKKSGPKETIKSQAKSSSESKINQPELETRMS
       .:  .   .  ... .: .:... .:    ::  ::  ::  :..:  : ..:: :   :
KIAA08 AKSPAEAKSPVKEEAKSPAEVKSPEKA---KSPTKEEAKSPEKAKSPEKAKSPEKEEAKS
     620       630       640          650       660       670      

             100       110       120       130       140       150 
KIAA19 TRSSKAASNDKATKSINKNTVTVRGYSQESTKKKLSQKKLVHENPKANEQLNRRSQRLQQ
        ...:.  . .: :: .:    :.. ..   : :   :. ..   ::.  ......    
KIAA08 PEKAKSPVKAEA-KSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAK----
        680        690       700       710       720       730     

             160       170       180       190       200       210 
KIAA19 LTEVSRRSLRSREIQGQVQAVKQSLPPTKKEQCSSTQSKSNKTSQKHVKRKVLEVKSDSK
           : .. .:  .. .... ...  :.:.:  :  ..:: . . : .  :  :.:. .:
KIAA08 ----SPEKAKS-PVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKA-KTLDVKSPEAKTPAK
                  740       750       760       770        780     

             220       230       240        250       260       270
KIAA19 EDENLVINEVINSPKGKKRKVEHQTACACSSQCT-QGSEKCPQKTTRRDETKPVPVTSEV
       :.     ..    :.  :  :....    ...   . . : :.:   . :    ::  : 
KIAA08 EEARSPADKF---PEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEE
         790          800       810       820       830       840  

              280       290             300         310       320  
KIAA19 KRSKMATSVVPKKNEMKKSVHT------QVNTNTTLPK--SPQPSVPEQSDNELEQAGKS
       : ... ..  ::: : .:.  :      . . .   ::  .:.:.: :...  .:.  .:
KIAA08 KPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKES
            850       860       870       880       890       900  

            330           340        350         360       370     
KIAA19 KRGSILQLCEEI----AGEIESD-NVEVKKESSQMES--VKEEKPTEIKLEETSV---ER
       :  .  .  :.     . : :.  .::::....  :.  : ...: . : .: :    ..
KIAA08 KVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKK
            910       920       930       940       950       960  

            380       390       400       410       420       430  
KIAA19 QILHQKETNQDVQCNRFFPSRKTKPVKCILNGINSLAKKNSNWTKIKLSKFNSVQHNKLD
       .   .:. ... . ..  : .: :      .  ..:.:. :.    :  : .:....  :
KIAA08 EAAPEKKDTKEEKAKK--PEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSSSTDQK--D
            970         980       990      1000      1010          

            440       450       460       470       480       490  
KIAA19 SQVSPKLGLLRTSFSPPALEMHHPVTQSTFLGTKLHDRNITCQQEKMKEINSEEVKINDI
       :.   :                                                      
KIAA08 SKPPEKATEDKAAKGK                                            
     1020      1030                                                




864 residues in 1 query   sequences
1986641 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:21:49 2008 done: Thu Dec 18 15:21:50 2008
 Total Scan time:  0.620 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]