hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16160825/chunk_1/iprscan-20080502-16160825.nocrc
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Query sequence: KIAA1909
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 102.5    4.8e-26   1
SM00233                                                  39.0    6.4e-07   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00325     1/1     825   999 ..     1   211 []   102.5  4.8e-26
SM00233     1/1    1013  1122 ..     1    82 []    39.0  6.4e-07

Alignments of top-scoring domains:
SM00325: domain 1 of 1, from 825 to 999: score 102.5, E = 4.8e-26
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      ++ E+++TEr+Y+r L ++++++  ++++++    lp   + +++ +
    KIAA1909   825    IMAEMIATEREYIRCLGYVIDNYFPEMERMD----LPQGLRGKHHVI 867  

                   FgpNieeiyefH.rrFLdeLeerveewllskdlKsernsviedsgerigd
                   Fg N+e +++fH+++FL eLe +                     +  +g+
    KIAA1909   868 FG-NLEKLHDFHqQHFLRELERCQHC------------------PLAVGR 898  

                   vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies
                    Fl +   ee+f +Y  Y +n+p++ +ll+       n +F++  +e+  
    KIAA1909   899 SFLRH---EEQFGMYVIYSKNKPQSDALLSS----HGNAFFKDKQRELGD 941  

                   kpncrsksearltLeslLikPvQRltkYpLLLkellkhtpp...dhedre
                   k          ++L s+L+ PvQR+ kY LLL++llk  + +     +  
    KIAA1909   942 K----------MDLASYLLRPVQRVAKYALLLQDLLKEASCglaQGQELG 981  

                   dLkkAleaikelasqvNe<-*
                   +L  A  +++  +++ N+   
    KIAA1909   982 ELRAAEVVVCFQLRHGND    999  

SM00233: domain 1 of 1, from 1013 to 1122: score 39.0, E = 6.4e-07
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk........
                      +  +G+L+ +       +++   r+++Lf++ +l+ k  + +++++ 
    KIAA1909  1013    LKEQGQLRCRDefivccGrKKYLRHVFLFEDLILFSKTQkvegshdv 1059 

                   .kpkgsipLsgcsvre.p.....cFeivt.dr.....tlllqAeseeere
                     +k s+   ++  +e++++++  Fei+++ r+++++t++lqA+s+e + 
    KIAA1909  1060 yLYKQSFKTAEIGMTEnVgdsglRFEIWFrRRqksqdTYILQASSAEVKS 1109 

                   eWvealqsaiaka<-*
                    W + + + + ++   
    KIAA1909  1110 AWTDVIGRILWRQ    1122 

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