# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ah02604.fasta.nr -Q ../query/KIAA1908.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1908, 445 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7815919 sequences Expectation_n fit: rho(ln(x))= 5.6890+/-0.000205; mu= 10.1979+/- 0.011 mean_var=119.2308+/-22.625, 0's: 36 Z-trim: 62 B-trim: 559 in 2/66 Lambda= 0.117457 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|133915898|emb|CAM06011.1| PE-PGRS family protei (1984) 235 51.4 0.0024 gi|161436|gb|AAA30035.1| alpha-1 collagen gi|4 (1414) 227 49.8 0.0049 gi|149408900|ref|XP_001507737.1| PREDICTED: simila ( 605) 221 48.4 0.0056 gi|221505451|gb|EEE31096.1| chloride channel prote (1733) 226 49.8 0.0063 gi|114659216|ref|XP_001144516.1| PREDICTED: hypoth ( 293) 214 46.9 0.0079 gi|178465232|dbj|BAG19752.1| putative NADH dehydro ( 489) 215 47.3 0.0098 >>gi|133915898|emb|CAM06011.1| PE-PGRS family protein [S (1984 aa) initn: 177 init1: 73 opt: 235 Z-score: 216.3 bits: 51.4 E(): 0.0024 Smith-Waterman score: 240; 27.040% identity (47.319% similar) in 429 aa overlap (22-415:538-930) 10 20 30 40 50 KIAA19 PRLKDLLPRTRPLPQGDLKAFSPPCLSVPIHTLGTAPCS-PAASQAGLCSC :: : : . .: : : .... . gi|133 ASSEGPRSFGDSSPGTGSSPAAAASPGSGSSPDSGSSPAFGSSPSPGSFPDSGSSPASGP 510 520 530 540 550 560 60 70 80 90 100 KIAA19 SPHPAWRPGQKDAEVAERADGLAGRADL-LHGAGILLRQRQMMDCTWTLPGMRATWQPAP ::: . :. .: .: : .: ::. . : . .: . : . .. : : gi|133 SPHSGASPSAGSAPTAGAAP--SG-ADVPRRPEGPAATTASNVDAP-ARPDLGSS-APPP 570 580 590 600 610 620 110 120 130 140 150 160 KIAA19 FLPW-DQTPWRVSFSWSPVLLAWGGVWSGEAHPCAHVLRPPASPCPP-----RPRRG--- : :: .: : : ::. .: : . . : :. :: :: : gi|133 SAPRTDQPAGPASGS------AMGGAPAG--GPAGGA--PSAGGAPPAGRGSRPGTGGGW 630 640 650 660 670 170 180 190 200 210 KIAA19 CGDSGSSGMAQRAQAGSNQSRGKCGRDGRCPPRSSPGAPEAAERVESAETR---GPGKSW : :: : : :: :: .. :: : : : :::: :. :. .. .: :: . gi|133 TGTPGSPGAAGRAPAGPDSPRG------RGPER--PGAP-AGPRAGATPSRPQAGPDAQR 680 690 700 710 720 220 230 240 250 260 KIAA19 ILSPSSMSEP-------RRGKA--RR--SPGRR-RHPHSSFPQASSPSSPSRRETIPQVQ : . : .:: : :: .::: . :.. .: :..:..: :. gi|133 PHPPRRGGAPEAPGVPVQRGDAPGRRPAGPGRGPEAPEGPRAEAPRPQTPGHRPDGPR-P 730 740 750 760 770 780 270 280 290 300 310 320 KIAA19 SSGVPGAMSPEQTLFSRSPRGLSHLGQSLCRTVKESEAQRGKTMPPGSHSPSGAGQGRTA . ::. :. ::: . .. . . .: : .. ::. :.:. . .. gi|133 DFHRPGGPVPN------SPRPDAPRPNTPHPNGPRPDAPRPEASRPGAPRPDGT-RPEAL 790 800 810 820 830 330 340 350 360 370 KIAA19 RKGPAREEIPSSDSSAKPSVYPHPHLTATRWGRHHCPFSKVRKQRLR---------EVQQ : : . . : :. .:.. :.: : .: : . : . :: . . gi|133 RPGTPQANAPRPDAP-RPDA-PRPGAPRTDASRPDGPHPN-RPEGLRPDGPRSDGPRPEV 840 850 860 870 880 890 380 390 400 410 420 430 KIAA19 LLPQLLRCRTAVPGVPELSLPEPSAPALLSEPWPSQSKPGSGCSEALGLVNPSCLGPGPP . :. : .. : .:.:. :.:.:: . : :. :.: gi|133 IRPDGPRPDASRPDAPRLDGPRPDAPRP-DGPHPAVSRPDAPNRRVTAEPDQNRWAWAGI 900 910 920 930 940 950 440 KIAA19 PGGDPEGCS gi|133 KPNDFGHIKGQGEPHWGPGWQRRMAEDAKIRAESLGYHRPPAADTPQSPAPMPEPEAPQR 960 970 980 990 1000 1010 >>gi|161436|gb|AAA30035.1| alpha-1 collagen gi|47551 (1414 aa) initn: 177 init1: 91 opt: 227 Z-score: 210.8 bits: 49.8 E(): 0.0049 Smith-Waterman score: 227; 24.771% identity (45.642% similar) in 436 aa overlap (23-440:62-472) 10 20 30 40 50 KIAA19 PRLKDLLPRTRPLPQGDLKAFSPPCLSVPIHTLG-TAPCSPAASQAGLCSCS :: : :. : ..: .::.... gi|161 QAAGQYSEGPRGDKGQKGEPGDADINSANFPPGLPGPVGPPGPSGPSGPAGNNG-----P 40 50 60 70 80 60 70 80 90 100 KIAA19 PHPAWRPGQKDAEVAERADGLAGRADLLHGAGILLRQRQMMDCTW--TLPGMRATWQPAP : : :. . :. : .: :. . : . . .: :.. : gi|161 PGPNGPRGNPGMDGLTGLPGIPGPPGPPGKSGSLVASAQTSSFNKGPSLAGYQYPQAQAA 90 100 110 120 130 140 110 120 130 140 150 160 KIAA19 FLPWDQTPWRVSFSWSPVLLAWGGVWSGEAHPCAHVLRPPASPCPPRPRRGCGDSGSSG- : . : : .: :. . :::. : .. : : : :: ::.:. : gi|161 GTPGPRGPPGPPGSRGPQGLTGPSGPSGETGPSGNSGPPGPSGLPGRPGSD-GDDGTPGS 150 160 170 180 190 200 170 180 190 200 210 220 KIAA19 MAQRAQAGSNQSRGKCGRDGRCPPRSSPGAP----EAAERVESAETRG----PGKSWILS ..::. ::. ::: : : .. : : .:: :..: :: :: . gi|161 QGQRGPAGTPGSRGTPGMPGAPGMKGHQGLPGMTGSKGERGEGGE-RGSDGSPGPVGAPG 210 220 230 240 250 260 230 240 250 260 270 280 KIAA19 PSSMSEPRRGKARRSPGRRRHPHSSFPQASSPSSPSRRETIPQVQSSGVPGAMSPEQTLF :.. : ..: .:. . ... ..: . :. : : . . :.:: . . gi|161 PAGPSGQPGERGRTGPAGSQGDRGADGATGSQGPPGS--TGP-AGAPGMPGISGAKGDAG 270 280 290 300 310 320 290 300 310 320 330 KIAA19 SRSPRGLSHLGQSLCRTVKESEAQRGKTMPPGSHSPSGAGQGRTARKGPAREE----IPS : . :: : . : . ::...:.: ::: . .:.. : . ::. . .:. gi|161 SPGARGSP--GLQGARGERGSEGSQGQTGPPGVPGRDGSN-GAKGSAGPSGAQGTPGFPG 330 340 350 360 370 340 350 360 370 380 390 KIAA19 SDSSAKPSVYPHPHLTATRWGRHHCPFSKVRKQRLREVQQLLPQLLRCRTAVPGVPELSL . . :. : : . : : .. : : :. .. ::. : gi|161 ARGPPGPAGSPGPAGSKGDQGNPGQPGAQ------GESGPLGPRGETGPAGPPGAQGESG 380 390 400 410 420 430 400 410 420 430 440 KIAA19 PEPSAPALLSEPWPSQSKPGSGCSEALGLVNPSCLG-PGPPPG-GDPEGCS . : :: . . : .: .: . :. : :: : . :: gi|161 ERGSRGAL------GPAGPPGGVGERGPMGPPGMSGAPGAPGAKGDRGLPGERGSAGSKG 440 450 460 470 480 gi|161 SAGESGRPGEPGMPGQRGLTGPPGKQGRDGKPGPAGAPGEPGNSGPAGASGQRGLPGLVG 490 500 510 520 530 540 >>gi|149408900|ref|XP_001507737.1| PREDICTED: similar to (605 aa) initn: 157 init1: 71 opt: 221 Z-score: 209.7 bits: 48.4 E(): 0.0056 Smith-Waterman score: 254; 27.726% identity (48.910% similar) in 321 aa overlap (126-433:21-315) 100 110 120 130 140 150 KIAA19 WTLPGMRATWQPAPFLPWDQTPWRVSFSWSPVLLAWGGVWSGEAHPCAHVL---RPPASP ::: . .:: .: : : .: ::: :: gi|149 MQDALLPGFTNAIIVIIDQYPVLEGTSGVMGGAATPWLSILEGERPPPSP 10 20 30 40 50 160 170 180 190 200 210 KIAA19 CPPRPR-RGCGDSGSSGMAQRAQAGSNQSRGKCGRDGRC-PPRSSPGAPEAAERVESAET : : : .: ....: : :: .... . :: : : : .. : ..:. gi|149 TPSRARCPACRPGSGGGEAPAPAAGPGRTQDLASLRGRSRDPLPRPDACPGTARRQTAQD 60 70 80 90 100 110 220 230 240 250 260 KIAA19 RGPGKSWILSPSSM-----SEPRRGKARRSPGRRRHPHSSFPQASSPSSPSRRETIPQVQ : :... :.::. .: ::. ::. .. : . :: :.::.:.: : . gi|149 RPPSRG--LKPSAGVGERGPDPARGQEPGSPALQE-PDGRTDQA--PDSPARQEESPPTG 120 130 140 150 160 270 280 290 300 310 320 KIAA19 SSGVPGAMSPEQTLFSRSPRGLSHLGQSLCRTVKESEAQRGKTMPPGSHSPSGAGQGRTA : : : .: .:: ..:..: . : : .: . ::. . : gi|149 SRTSQPARS--RTSPPTGPR-TAQLARS-----RTSPPTRPRTAHQAPDSPTDRAPDIPA 170 180 190 200 210 330 340 350 360 370 380 KIAA19 RKGPAREEIPSSDSSAKPSVYPHPHLTATRWGRHHCPFSKVRKQRLREVQQLLPQLLRCR . : ..:.. .. .: . : : : : : . ..:. : . . gi|149 LQKP---DVPTDRAQDNPPGLRQSH----RPGPGH-PSPQELDVPTDRAQDGPPGPRQSH 220 230 240 250 260 390 400 410 420 430 440 KIAA19 TAVPGVPELSLPEPSAPALLSEPWPSQ-SKPGSGCSEALGLV--NPSCLGPGPPPGGDPE :: : : : . : .: :.: :.::.: . : . : :. : gi|149 RPGPGHP--SPPGAGHP---HRPGPGQPSSPGAGQPRPPGRAPRAPMCFCPRRSHEGGMT 270 280 290 300 310 320 KIAA19 GCS gi|149 SKDGASPPGLLQPWKLVFGPRAGPRPGRPPPNGLYVVATVAVWLATGTSMSSLNKWIFTV 330 340 350 360 370 380 >>gi|221505451|gb|EEE31096.1| chloride channel protein k (1733 aa) initn: 288 init1: 117 opt: 226 Z-score: 208.8 bits: 49.8 E(): 0.0063 Smith-Waterman score: 242; 25.647% identity (45.882% similar) in 425 aa overlap (37-445:93-472) 10 20 30 40 50 60 KIAA19 LPRTRPLPQGDLKAFSPPCLSVPIHTLGTAPCSPAASQAGLCSCSP--HPAWRPGQKDAE : :. . . : : :: :: : ... gi|221 RLVSWLVTLLLRQCCGSAFTVDFANNACIPPAPPSLQFSPLPSSSPLSSPASSPDASSST 70 80 90 100 110 120 70 80 90 100 110 120 KIAA19 VAERADGLAGRADLLHGAGILLRQRQMMDCTWTLPGMRATWQPAPFLPWDQTPWRVSFSW . : : .:.. .:. : .. :: .:. . : .. ..... gi|221 ESADAVGRGGKSA--EGGEAAKAARLLFPPTWL------SWSALVLGPTSEPFVHADLKM 130 140 150 160 170 130 140 150 160 170 180 KIAA19 SPVLLAWGGVWSGEAHPCAHVLRPPASPCPPRPRRGCGDSGSSGMAQRAQAGSNQSRGKC : : . : . : .:: : . . :: . . .:. : . gi|221 RPFL----------SPPSSSSSSPSSSPSSSSPPPSSSPPPSSPPSPSSAPSSSTSPSPS 180 190 200 210 220 190 200 210 220 230 240 KIAA19 GRDGRCPPRSSPGAPEAAERVESAETRGPGKSWILSPSSMSEPRRGKARRSPGRRRHPHS . :: ::: .: .: . . .:. : :: : : : :: : gi|221 S-----PPSSSPPSPSSAP----SSSTSPSPS---SPPSPSSP----PPSSPPSSSPPSP 230 240 250 260 250 260 270 280 290 300 KIAA19 SFPQASSPSSPSRRETIPQVQSSGVPGAMSPEQTLFSRSPRGLSHLGQSLCRTVKESEAQ : : .::: ::: . : .:: : :: .. : :: . : ..: . . . gi|221 SSPPSSSPPSPSPPPSSPPSSSSTSP---SP-SSAPSSSPPSSSPSSSSPPPSSSPPPPS 270 280 290 300 310 320 310 320 330 340 350 360 KIAA19 RGKTMPPGSHSPSGAGQGR---TAR-KGPAREEIPSSDSSAKPSVYPHPHLTATRWGRHH .. ::.: :::.. . . : .::: : . . ::. . ::. .:. . gi|221 PPSSSPPSSSSPSSSPSPSADLSERAQGPANEAPEKRNESAEVDKTSHPRENASNGSPAS 330 340 350 360 370 380 370 380 390 400 410 KIAA19 CPFSKVRKQRLREVQQL----LPQLL-----RCRTAVPGVPELSLPEPSAPALLSEPWPS .: .:. .. ..: :.: : ::: : : : : :.: :. : : gi|221 GRLSGSEKEATQNSSDLDKASSPSLAATTKDRERTA-PVVSS-SPPLPAASLSLQSPRNS 390 400 410 420 430 440 420 430 440 KIAA19 QSKPGSGCSEALGLVNPSCLG-PGPPPGGDPEGCS :. : : .. :: . :. ::.. : . : gi|221 QGDPTS-----FSTFPPSSSSSPSSPPSALPPSSSSTVASSLSSPPPGPVTSALEESKRN 450 460 470 480 490 gi|221 ETTASGEKKQPYSGVVTLEPLPSHPSSVSNVTSLSSLSPIVSSRRLSVNFPSPHQPKQPS 500 510 520 530 540 550 >>gi|114659216|ref|XP_001144516.1| PREDICTED: hypothetic (293 aa) initn: 131 init1: 79 opt: 214 Z-score: 207.1 bits: 46.9 E(): 0.0079 Smith-Waterman score: 214; 27.365% identity (50.000% similar) in 296 aa overlap (140-416:2-273) 110 120 130 140 150 160 KIAA19 FLPWDQTPWRVSFSWSPVLLAWGGVWSGEAHPCAHVLRP-PASPCPPRPRR----GCGDS : :. : :. ::::: : : . gi|114 MHRCGD---PSPGLADPPRPRTEEEAGAGPG 10 20 170 180 190 200 210 220 KIAA19 GSSGMAQRAQAGSNQS-RGKCGRDGRCPPRSSPGAPEAAERVESA-ETRGPGKSWILSPS ...: : .. .:. . :: : :: ..: : : .:. :::.. gi|114 AGAGTAGGGKRASGPAHRGVWG----CP--TAPPAGAAQTPAEGPCPFAGPGQG----RE 30 40 50 60 70 230 240 250 260 270 KIAA19 SMSEPRRGKARRSP--GRRRHPHSS-FPQASSPSSPSRRETIPQVQSSGVPGAMSPEQTL .: . ::.:.: :: .:. . :.:. ..: : .. :.: .. : .::... gi|114 RARDPAQVKAERGPVSPRRSRPREGPCPHAGPGQGPERARVPTQAQVKAERGPVSPRRSR 80 90 100 110 120 130 280 290 300 310 320 330 KIAA19 FSRSPRGLSHLGQSLCR--TVKESEAQRGKTMP--PGSH-----SPSGAGQGRTARKGPA ..: . :. : : . .:::: : : :. :: : :::: . :: gi|114 PREGPCPRGGQGRERARVPTQAQVKAQRGPESPRRPRSRPREGPSPRG-GQGRERARVPA 140 150 160 170 180 190 340 350 360 370 380 390 KIAA19 REEIPSSDSSAKPSVYPHPHLTATRWGRHHCPFSKVRKQRLREVQQLLPQLLRCRTAVPG :. . . . : :.:.. . .: . . . .: : .: :. : gi|114 --EVKAERGPVTPH-RPRPKVLVPVQARAEAERGPLFPRRPRPRVPVLAQM------VSW 200 210 220 230 240 400 410 420 430 440 KIAA19 VPELSLPEPSAPALLSEPWPSQSKPGSGCSEALGLVNPSCLGPGPPPGGDPEGCS : ..:: ..: .:. .: :: gi|114 GP-VALPPRGSPCVLGLAKSVRSAPGLQGPAVNKFVITFVGFYVAN 250 260 270 280 290 >>gi|178465232|dbj|BAG19752.1| putative NADH dehydrogena (489 aa) initn: 64 init1: 64 opt: 215 Z-score: 205.3 bits: 47.3 E(): 0.0098 Smith-Waterman score: 222; 27.134% identity (49.085% similar) in 328 aa overlap (131-442:202-489) 110 120 130 140 150 KIAA19 MRATWQPAPFLPWDQTPWRVSFSWSPVLLAWGGVWSGEAHPCAHVLRP--PASPCPPRPR :: . .:. : : :: : : :: gi|178 GAKEPGEPAEGHAGPQRRAMLPPGVPDPNEWGPM-KGRLPPAAA--RPGRAARPAADRPP 180 190 200 210 220 160 170 180 190 200 210 KIAA19 RGCGDSGSSGMAQRAQAGSNQSRGKCGRDGRCPPRSS--PGA--PEAAERVESAETRGPG : .: .. :::: : . .. : . :..: ::: : . : .: . :. gi|178 RRTRTAGEGSAAQRATAPGPEATGAGAAPETAGPETSTAPGAQAPTPTTREAAAAPQTPA 230 240 250 260 270 280 220 230 240 250 260 270 KIAA19 KSWILSPSSMSEPRRGKARRSPGRRRHPHSSFPQASSPSSPSRRETIPQVQSSGVPGAMS .:.. ..:::... . . ..: .. : .: ..:.:: . :. :. : gi|178 APG--TPAA-ARPRRSRSASDGSASQQPPADAPAETS-AAPARR------SRSASDGSAS 290 300 310 320 330 280 290 300 310 320 330 KIAA19 PEQTLFSRSPRGLSHLGQSLCRTVKESEAQRGKTMPPGSH--SP-SGAGQGRTARKGPAR : : : . .. :. . :... :. :: :: :: ..:.: .: : gi|178 --QRAEPDEP-GATP-ARPARRSRSASDGSAGQRSGPGESPASPTSGPRRSRSASEGSAS 340 350 360 370 380 390 340 350 360 370 380 390 KIAA19 EEIPSSDSSAKPSVYPHPHLTATRWGRHHCPFSKVRKQRLREVQQLLPQLLRCRTAVPGV .. .::. : : :.. .: :. .: . : . :. .: : . gi|178 QR-SASDAPEGPPPRP-PRVRST-----DAPWHDARPA-FDEPEG--PE-----AASPDA 400 410 420 430 400 410 420 430 440 KIAA19 PELSL----PEPS-APALLSEPWPSQSKPGSGCSEALGLVNPSCLGPGP--PPGGDPEGC : :.:: :: ..: :... :: .:: :.: : ::::: gi|178 SSRPLRRNAPDPSDAPDPSDQPAPDKQPPGPD--------HPSPDHPAPDHPAGGDPE 440 450 460 470 480 KIAA19 S 445 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Fri Mar 6 02:32:24 2009 done: Fri Mar 6 02:36:46 2009 Total Scan time: 1482.760 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]