hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16092342/chunk_1/iprscan-20080502-16092342.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1905 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00262 442.5 2.2e-128 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00262 1/4 63 160 .. 1 102 [] 111.5 9.4e-29 SM00262 2/4 181 273 .. 1 102 [] 105.4 6.3e-27 SM00262 3/4 298 393 .. 1 102 [] 120.1 2.5e-31 SM00262 4/4 442 535 .. 1 102 [] 105.4 6.5e-27 Alignments of top-scoring domains: SM00262: domain 1 of 4, from 63 to 160: score 111.5, E = 9.4e-29 *->yklflwrvkgkknvrvpeVpfsqgsLnsgDcyiLdtg.......gse +l++wr++ ++v+vp + ++g+++ gD+y+++++ +++++ ++ KIAA1905 63 AGLQVWRIEKLELVPVP--QSAHGDFYVGDAYLVLHTaktsrgfTYH 107 iyvWvGkkssqdEkkkAaelAvelddelrLeGppagrprptqvrvvdeGk +++W+Gk++sqdE ++Aa+++v++dd+l +++p+q r++ +G+ KIAA1905 108 LHFWLGKECSQDESTAAAIFTVQMDDYL--------GGKPVQNREL-QGY 148 EppeFwslFggw<-* E+ F s+F+g+ KIAA1905 149 ESNDFVSYFKGG 160 SM00262: domain 2 of 4, from 181 to 273: score 105.4, E = 6.3e-27 *->yklflwrvkgkknvrvpeVpfsqgsLnsgDcyiLdtggseiyvWvGk + +l++vkg+++vr+ eVp+s++s+n gDc+i+d g +eiy+W+G+ KIAA1905 181 TAKRLLHVKGRRVVRATEVPLSWDSFNKGDCFIIDLG-TEIYQWCGS 226 kssqdEkkkAaelAvelddelrLeGppagrprptqvrvvdeGkEppeFws ++ E+ kA ++A ++ ++ r+++ + +vv+eG Ep e + KIAA1905 227 SCNKYERLKANQVATGIRYNE--------RKGRSELIVVEEGSEPSELIK 268 lFggw<-* ++g + KIAA1905 269 VLGEK 273 SM00262: domain 3 of 4, from 298 to 393: score 120.1, E = 2.5e-31 *->yklflwrvkgkknvrvpeVpfsqgsLnsgDcyiLdtg.gseiyvWvG y ++ +++++ v+++e pfs +L s+ c+iLd+g +++i+vW+G KIAA1905 298 YMVSDASGSMRVTVVAEENPFSMAMLLSEECFILDHGaAKQIFVWKG 344 kkssqdEkkkAaelAvelddelrLeGppagrprptqvrvvdeGkEppeFw k+++++E+k+A+++A+e+++++ ++++ tq++v++eG E+p F+ KIAA1905 345 KDANPQERKAAMKTAEEFLQQM-------NYSKNTQIQVLPEGGETPIFK 387 slFggw<-* ++F+ w KIAA1905 388 QFFKDW 393 SM00262: domain 4 of 4, from 442 to 535: score 105.4, E = 6.5e-27 *->yklflwrvkgkknvrvpeVpfsqgsLnsgDcyiLdtg...gseiyvW +k+++wrv++ + + v+ + s+g +++gDcyi++++ ++g++iy W KIAA1905 442 GKVEIWRVENNGRIQVD--QNSYGEFYGGDCYIILYTyprGQIIYTW 486 vGkkssqdEkkkAaelAvelddelrLeGppagrprptqvrvvdeGkEppe +G ++++dE +++a l+v+ld++l ++ ++q+rv +GkEp + KIAA1905 487 QGANATRDELTTSAFLTVQLDRSL--------GGQAVQIRVS-QGKEPVH 527 FwslFggw<-* +slF+ + KIAA1905 528 LLSLFKDK 535 //