hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16092342/chunk_1/iprscan-20080502-16092342.nocrc
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Query sequence: KIAA1905
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00626.12.ls Gelsolin repeat                                304.8    1.5e-88   4
PF00626.12.fs Gelsolin repeat                                297.5    2.3e-86   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00626.12.fs   1/4      72   154 ..     1    96 []    82.8  3.7e-23
PF00626.12.ls   1/4      72   154 ..     1    96 []    84.6  2.8e-22
PF00626.12.ls   2/4     192   267 ..     1    96 []    84.1  3.9e-22
PF00626.12.fs   2/4     192   267 ..     1    96 []    82.3    5e-23
PF00626.12.fs   3/4     309   387 ..     1    96 []    69.4  2.6e-19
PF00626.12.ls   3/4     309   387 ..     1    96 []    71.2    3e-18
PF00626.12.ls   4/4     451   529 ..     1    96 []    64.8  2.5e-16
PF00626.12.fs   4/4     451   529 ..     1    96 []    63.0  1.8e-17

Alignments of top-scoring domains:
PF00626.12.fs: domain 1 of 4, from 72 to 154: score 82.8, E = 3.7e-23
                   *->nfvlpppvplsqeslnsgdcyLLDngfk.gg.lnyhiflWvGkkssq
                      + +l+p+++ ++++++ gd+yL++++ k++ +++yh+++W+Gk++sq
    KIAA1905    72    KLELVPVPQSAHGDFYVGDAYLVLHTAKtSRgFTYHLHFWLGKECSQ 118  

                   WRKagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparF
                            de +aaa+ ++++dd+      ++++pv+ r+ qg e++ F
    KIAA1905   119 ---------DESTAAAIFTVQMDDY------LGGKPVQNRELQGYESNDF 153  

                   l<-*
                   +   
    KIAA1905   154 V    154  

PF00626.12.ls: domain 1 of 4, from 72 to 154: score 84.6, E = 2.8e-22
                   *->nfvlpppvplsqeslnsgdcyLLDngfk.gg.lnyhiflWvGkkssq
                      + +l+p+++ ++++++ gd+yL++++ k++ +++yh+++W+Gk++sq
    KIAA1905    72    KLELVPVPQSAHGDFYVGDAYLVLHTAKtSRgFTYHLHFWLGKECSQ 118  

                   WRKagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparF
                            de +aaa+ ++++dd+      ++++pv+ r+ qg e++ F
    KIAA1905   119 ---------DESTAAAIFTVQMDDY------LGGKPVQNRELQGYESNDF 153  

                   l<-*
                   +   
    KIAA1905   154 V    154  

PF00626.12.ls: domain 2 of 4, from 192 to 267: score 84.1, E = 3.9e-22
                   *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyhiflWvGkkssqWR
                      ++v++++vpls++s+n gdc+++D g+      +i++W+G+ ++   
    KIAA1905   192    RVVRATEVPLSWDSFNKGDCFIIDLGT------EIYQWCGSSCNK-- 230  

                   KagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparFl<
                           e+l+a ++a++++ ++     r ++ ++++v++g ep +++ 
    KIAA1905   231 -------YERLKANQVATGIRYNE-----RKGRSELIVVEEGSEPSELI  267  

                   -*
                     
    KIAA1905     -    -    

PF00626.12.fs: domain 2 of 4, from 192 to 267: score 82.3, E = 5e-23
                   *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyhiflWvGkkssqWR
                      ++v++++vpls++s+n gdc+++D g+      +i++W+G+ ++   
    KIAA1905   192    RVVRATEVPLSWDSFNKGDCFIIDLGT------EIYQWCGSSCNK-- 230  

                   KagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparFl<
                           e+l+a ++a++++ ++     r ++ ++++v++g ep +++ 
    KIAA1905   231 -------YERLKANQVATGIRYNE-----RKGRSELIVVEEGSEPSELI  267  

                   -*
                     
    KIAA1905     -    -    

PF00626.12.fs: domain 3 of 4, from 309 to 387: score 69.4, E = 2.6e-19
                   *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyhiflWvGkkssqWR
                       +v++++ p+s  +l s+ c++LD+g       +if+W+Gk +++  
    KIAA1905   309    VTVVAEENPFSMAMLLSEECFILDHGA----AKQIFVWKGKDANP-- 349  

                   KagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparFl<
                          +e++aa+ +a+e+++ ++    +++ +++++ ++g+e + F+ 
    KIAA1905   350 -------QERKAAMKTAEEFLQQMN----YSKNTQIQVLPEGGETPIFK  387  

                   -*
                     
    KIAA1905     -    -    

PF00626.12.ls: domain 3 of 4, from 309 to 387: score 71.2, E = 3e-18
                   *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyhiflWvGkkssqWR
                       +v++++ p+s  +l s+ c++LD+g       +if+W+Gk +++  
    KIAA1905   309    VTVVAEENPFSMAMLLSEECFILDHGA----AKQIFVWKGKDANP-- 349  

                   KagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparFl<
                          +e++aa+ +a+e+++ ++    +++ +++++ ++g+e + F+ 
    KIAA1905   350 -------QERKAAMKTAEEFLQQMN----YSKNTQIQVLPEGGETPIFK  387  

                   -*
                     
    KIAA1905     -    -    

PF00626.12.ls: domain 4 of 4, from 451 to 529: score 64.8, E = 2.5e-16
                   *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyhiflWvGkkssqWR
                      n+ +  +++ s++ ++ gdcy++++++  + +++i+ W+G ++++  
    KIAA1905   451    NNGRIQVDQNSYGEFYGGDCYIILYTY--PRGQIIYTWQGANATR-- 493  

                   KagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparFl<
                          de++ +a+l+++ld +      +++ +v++rv qgkep ++l 
    KIAA1905   494 -------DELTTSAFLTVQLDRS------LGGQAVQIRVSQGKEPVHLL  529  

                   -*
                     
    KIAA1905     -    -    

PF00626.12.fs: domain 4 of 4, from 451 to 529: score 63.0, E = 1.8e-17
                   *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyhiflWvGkkssqWR
                      n+ +  +++ s++ ++ gdcy++++++  + +++i+ W+G ++++  
    KIAA1905   451    NNGRIQVDQNSYGEFYGGDCYIILYTY--PRGQIIYTWQGANATR-- 493  

                   KagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparFl<
                          de++ +a+l+++ld +      +++ +v++rv qgkep ++l 
    KIAA1905   494 -------DELTTSAFLTVQLDRS------LGGQAVQIRVSQGKEPVHLL  529  

                   -*
                     
    KIAA1905     -    -    

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