hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16060363/chunk_1/iprscan-20080502-16060363.nocrc
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Query sequence: KIAA1903
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF09133.1.fs    SANTA (SANT Associated)                 157.4    7.8e-47   1
PF09133.1.ls    SANTA (SANT Associated)                 159.2    9.9e-45   1
PF00249.21.fs   Myb-like DNA-binding domain              29.1      5e-07   1
PF00249.21.ls   Myb-like DNA-binding domain              30.9    4.2e-06   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF09133.1.fs      1/1     265   357 ..     1   117 []   157.4  7.8e-47
PF09133.1.ls      1/1     265   357 ..     1   117 []   159.2  9.9e-45
PF00249.21.fs     1/1     759   808 ..     1    65 []    29.1    5e-07
PF00249.21.ls     1/1     759   808 ..     1    65 []    30.9  4.2e-06

Alignments of top-scoring domains:
PF09133.1.fs: domain 1 of 1, from 265 to 357: score 157.4, E = 7.8e-47
                   *->VhLrDWwLiKCPKKvinngkdlkVeGfvrseedilwhlFtSsfIvkR
                      V L++W++     K inn+++++VeG++ ++++i+wh   S++I++R
    KIAA1903   265    VQLQEWMI-----KSINNNTAICVEGKLIDVTNIYWH---SNVIIER 303  

                   vkstvLkavsGriyvLvGkitsPvDstDACPPssdrekmlknGfpieicr
                   ++++ L+++sG+ y+L+G i              d  +m+++G+p +++r
    KIAA1903   304 IEHNKLRTISGNVYILKGMI--------------DQISMKEAGYPNYLIR 339  

                   kFmfGFPenWkGGdyidscl<-*
                   kFmfGFPenWk  ++id +l   
    KIAA1903   340 KFMFGFPENWK--EHIDNFL    357  

PF09133.1.ls: domain 1 of 1, from 265 to 357: score 159.2, E = 9.9e-45
                   *->VhLrDWwLiKCPKKvinngkdlkVeGfvrseedilwhlFtSsfIvkR
                      V L++W++     K inn+++++VeG++ ++++i+wh   S++I++R
    KIAA1903   265    VQLQEWMI-----KSINNNTAICVEGKLIDVTNIYWH---SNVIIER 303  

                   vkstvLkavsGriyvLvGkitsPvDstDACPPssdrekmlknGfpieicr
                   ++++ L+++sG+ y+L+G i              d  +m+++G+p +++r
    KIAA1903   304 IEHNKLRTISGNVYILKGMI--------------DQISMKEAGYPNYLIR 339  

                   kFmfGFPenWkGGdyidscl<-*
                   kFmfGFPenWk  ++id +l   
    KIAA1903   340 KFMFGFPENWK--EHIDNFL    357  

PF00249.21.fs: domain 1 of 1, from 759 to 808: score 29.1, E = 5e-07
                   *->rgrWtaeEdellveavekhGkgfg.IrlsltkanWkkIaeklgpgss
                       ++W++ E ++l  a++ ++k++++         W+++a+ +g    
    KIAA1903   759    DKEWNEKELQKLHCAFASLPKHKPgF--------WSEVAAAVG---- 793  

                   nnvlgrtaeqcklryykyk<-*
                       +r++e+c+++y  +    
    KIAA1903   794 ----SRSPEECQRKYMENP    808  

PF00249.21.ls: domain 1 of 1, from 759 to 808: score 30.9, E = 4.2e-06
                   *->rgrWtaeEdellveavekhGkgfg.IrlsltkanWkkIaeklgpgss
                       ++W++ E ++l  a++ ++k++++         W+++a+ +g    
    KIAA1903   759    DKEWNEKELQKLHCAFASLPKHKPgF--------WSEVAAAVG---- 793  

                   nnvlgrtaeqcklryykyk<-*
                       +r++e+c+++y  +    
    KIAA1903   794 ----SRSPEECQRKYMENP    808  

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