hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16042044/chunk_1/iprscan-20080502-16042044.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1902 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02181.13.ls Formin Homology 2 Domain 497.4 1.6e-146 1 PF02181.13.fs Formin Homology 2 Domain 495.4 6.2e-146 1 PF06371.4.fs Diaphanous GTPase-binding Domain 303.9 5e-99 1 PF06371.4.ls Diaphanous GTPase-binding Domain 305.7 8e-89 1 PF06367.7.fs Diaphanous FH3 Domain 231.3 1.5e-69 1 PF06367.7.ls Diaphanous FH3 Domain 233.2 5.3e-67 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06371.4.ls 1/1 42 295 .. 1 323 [] 305.7 8e-89 PF06371.4.fs 1/1 42 295 .. 1 323 [] 303.9 5e-99 PF06367.7.fs 1/1 297 503 .. 1 234 [] 231.3 1.5e-69 PF06367.7.ls 1/1 297 503 .. 1 234 [] 233.2 5.3e-67 PF02181.13.fs 1/1 637 1002 .. 1 413 [] 495.4 6.2e-146 PF02181.13.ls 1/1 637 1002 .. 1 413 [] 497.4 1.6e-146 Alignments of top-scoring domains: PF06371.4.ls: domain 1 of 1, from 42 to 295: score 305.7, E = 8e-89 *->lqmpsdeeLVdelFeelLkedrifmnlpedKrWeaLralsnekKWel l+mp eL +e+F+ +L + mnlp+dK + Lr+++nekKWel KIAA1902 42 LPMPEPGEL-EERFAIVL-NA---MNLPPDKA-RLLRQYDNEKKWEL 82 icqylsknkkgkkkksskselnekaiaSdileilteesspqeYiekLrsg ic++ + k+ +p +Yi+kL+ + KIAA1902 83 ICDQERFQV---KN------------------------PPHTYIQKLKGY 105 assekllscekeeeehslknkslgslSpstkvvddgLkvaelesLrVsLr ++ + + k+++++++ st+v l+ L++sLr KIAA1902 106 LDPAVT----------RKKFRRRVQE--STQV---------LRELEISLR 134 tnpvsWVkaFiklgNkGlirllkiLqtflkkkiyelestds.vesgveks tn++ WV++F++++NkGl++l+++L++ ++ +es++s+ves+v+ks KIAA1902 135 TNHIGWVREFLNEENKGLDVLVEYLSFAQYAVTFDFESVEStVESSVDKS 184 kkdspssedlskasprpsPqqnssqesksqqtlkllsqlsaqaqqlqkqq k++s+s+edl+++s+ psP++ns+++s ++++l++++++s KIAA1902 185 KPWSRSIEDLHRGSNLPSPVGNSVSRSGRHSALRYNTLPS---------- 224 lqqsttliektlpsidkkiqfecirClKalMNnklGlkrvLsheesivik ++++++++ k++ ++ci+Cl+a+MN+++G+++v+sh ++ ++ KIAA1902 225 ----RRTLKNSRLVSKKDDVHVCIMCLRAIMNYQYGFNMVMSHPHA--VN 268 llvlsLdssklktrklvleLLaalCiv<-* ++lsL++++++t+ lvleLLaa+C+v KIAA1902 269 EIALSLNNKNPRTKALVLELLAAVCLV 295 PF06371.4.fs: domain 1 of 1, from 42 to 295: score 303.9, E = 5e-99 *->lqmpsdeeLVdelFeelLkedrifmnlpedKrWeaLralsnekKWel l+mp eL +e+F+ +L + mnlp+dK + Lr+++nekKWel KIAA1902 42 LPMPEPGEL-EERFAIVL-NA---MNLPPDKA-RLLRQYDNEKKWEL 82 icqylsknkkgkkkksskselnekaiaSdileilteesspqeYiekLrsg ic++ + k+ +p +Yi+kL+ + KIAA1902 83 ICDQERFQV---KN------------------------PPHTYIQKLKGY 105 assekllscekeeeehslknkslgslSpstkvvddgLkvaelesLrVsLr ++ + + k+++++++ st+v l+ L++sLr KIAA1902 106 LDPAVT----------RKKFRRRVQE--STQV---------LRELEISLR 134 tnpvsWVkaFiklgNkGlirllkiLqtflkkkiyelestds.vesgveks tn++ WV++F++++NkGl++l+++L++ ++ +es++s+ves+v+ks KIAA1902 135 TNHIGWVREFLNEENKGLDVLVEYLSFAQYAVTFDFESVEStVESSVDKS 184 kkdspssedlskasprpsPqqnssqesksqqtlkllsqlsaqaqqlqkqq k++s+s+edl+++s+ psP++ns+++s ++++l++++++s KIAA1902 185 KPWSRSIEDLHRGSNLPSPVGNSVSRSGRHSALRYNTLPS---------- 224 lqqsttliektlpsidkkiqfecirClKalMNnklGlkrvLsheesivik ++++++++ k++ ++ci+Cl+a+MN+++G+++v+sh ++ ++ KIAA1902 225 ----RRTLKNSRLVSKKDDVHVCIMCLRAIMNYQYGFNMVMSHPHA--VN 268 llvlsLdssklktrklvleLLaalCiv<-* ++lsL++++++t+ lvleLLaa+C+v KIAA1902 269 EIALSLNNKNPRTKALVLELLAAVCLV 295 PF06367.7.fs: domain 1 of 1, from 297 to 503: score 231.3, E = 1.5e-69 *->gGhelvleaiinfkevcdereRFrtlvsaldsfssgeedasleykva gGhe++l a++nfkevc+e+ RF+ l++ +++ ed +++++va KIAA1902 297 GGHEIILSAFDNFKEVCGEKQRFEKLMEHFRN-----EDNNIDFMVA 338 tmqFINalvvagnspedlqfRlhLRsEftelGLdeyleklkntssesdkL +mqFIN++v +s+ed++fR+hL++Eft+lGLdeyl+klk+t esdkL KIAA1902 339 SMQFINIVV---HSVEDMNFRVHLQYEFTKLGLDEYLDKLKHT--ESDKL 383 ddqIklFeenmidvrellddantktkvledleeleerleelkesfaetsv ++qI+++ +n++dv++ll+da+tk+++le +eelee ++l e++++ KIAA1902 384 QVQIQAYLDNVFDVGALLEDAETKNAALERVEELEENISHLSEKLQD--T 431 eldslssvaellsnllkltgaedlllSilQhllllredseeskLvsyikl e++ +s++ el+++l++ +++d++ + +++ ++++ KIAA1902 432 ENEAMSKIVELEKQLMQRNKELDVV-----------REIYKDA-NTQVHT 469 leeivqqIllhrtkppdpkfeqslqenldegterlld<-* l +v++ ++ +++ +e++++e++++gt ++ KIAA1902 470 LRKMVKE--KEEAIQRQSTLEKKIHELEKQGTIK-IQ 503 PF06367.7.ls: domain 1 of 1, from 297 to 503: score 233.2, E = 5.3e-67 *->gGhelvleaiinfkevcdereRFrtlvsaldsfssgeedasleykva gGhe++l a++nfkevc+e+ RF+ l++ +++ ed +++++va KIAA1902 297 GGHEIILSAFDNFKEVCGEKQRFEKLMEHFRN-----EDNNIDFMVA 338 tmqFINalvvagnspedlqfRlhLRsEftelGLdeyleklkntssesdkL +mqFIN++v +s+ed++fR+hL++Eft+lGLdeyl+klk+t esdkL KIAA1902 339 SMQFINIVV---HSVEDMNFRVHLQYEFTKLGLDEYLDKLKHT--ESDKL 383 ddqIklFeenmidvrellddantktkvledleeleerleelkesfaetsv ++qI+++ +n++dv++ll+da+tk+++le +eelee ++l e++++ KIAA1902 384 QVQIQAYLDNVFDVGALLEDAETKNAALERVEELEENISHLSEKLQD--T 431 eldslssvaellsnllkltgaedlllSilQhllllredseeskLvsyikl e++ +s++ el+++l++ +++d++ + +++ ++++ KIAA1902 432 ENEAMSKIVELEKQLMQRNKELDVV-----------REIYKDA-NTQVHT 469 leeivqqIllhrtkppdpkfeqslqenldegterlld<-* l +v++ ++ +++ +e++++e++++gt ++ KIAA1902 470 LRKMVKE--KEEAIQRQSTLEKKIHELEKQGTIK-IQ 503 PF02181.13.fs: domain 1 of 1, from 637 to 1002: score 495.4, E = 6.2e-146 *->kkepkpkkkLKpLhWdKlnpsqdrgtsvWdkldeesfekkldldlse kk++k+k++++ ++W++l+p+q+ gt v++++d+e++ + dl+ +e KIAA1902 637 KKPIKTKFRMPVFNWVALKPNQINGT-VFNEIDDERILE--DLNVDE 680 lEelFsakakkkkekksseksskskkkkkeisvLDpkrsQNiaIlLrkls +Ee+F++ka++++ + ss+k + ++k ++++++L+++r++N+aI+Lrk KIAA1902 681 FEEIFKTKAQGPAIDLSSSKQKIPQKGSNKVTLLEANRAKNLAITLRKA- 729 klppeeivqailemDedvLgvvlflkemldllenLlkmaPtkeElkklqe +++++ei++ai+ +D ++L+ +d++e+L++++Pt+ E+k l KIAA1902 730 GKTADEICKAIHVFDLKTLP--------VDFVECLMRFLPTENEVKVL-- 769 keykgdekspskLgraEqqFLlelskliprleeRlrallFkstFeeevee + y ++k+++ L+ ++ +F++++sk i+rl +++ ++F+ +F+e++++ KIAA1902 770 RLYERERKPLENLSDED-RFMMQFSK-IERLMQKMTIMAFIGNFAESIQM 817 lkpsletleaAseeLreSrkfkklLeliLalGNyMNsGtrrrGnAkGFkL l+p+l +++aAs ++++S+k+kk+Le+iLalGNyMNs +r G ++GFkL KIAA1902 818 LTPQLHAIIAASVSIKSSQKLKKILEIILALGNYMNSSKR--GAVYGFKL 865 ssLlKLsdvKstidnktTLLHflvkeieesEGkrlEeyrKLklpelldfs +sL+ L+d+Kst d+k+TLLH++ ++ e k+ +++ f+ KIAA1902 866 QSLDLLLDTKST-DRKQTLLHYISNVVKE------------KYHQVSLFY 902 seLshVekAakvdleeLeadvkeLekglkklekelelseeSkvsdeepsd +eL+ VekAa+v+le++ dvkeL++g++ ++e + + + KIAA1902 903 NELHYVEKAAAVSLENVLLDVKELQRGMDLTKREYTMHDH---------- 942 kFvevmkeFleeAeekldkLesllkeakelfkelteYFghggedpkdets + +keF+ + e kl+kL+++ k a+++f+++++YF ge+pk +t+ KIAA1902 943 --NTLLKEFILNNEGKLKKLQDDAKIAQDAFDDVVKYF---GENPK-TTP 986 peeFFkilrdFlnefk<-* p +FF ++ +F++++k KIAA1902 987 PSVFFPVFVRFVKAYK 1002 PF02181.13.ls: domain 1 of 1, from 637 to 1002: score 497.4, E = 1.6e-146 *->kkepkpkkkLKpLhWdKlnpsqdrgtsvWdkldeesfekkldldlse kk++k+k++++ ++W++l+p+q+ gt v++++d+e++ + dl+ +e KIAA1902 637 KKPIKTKFRMPVFNWVALKPNQINGT-VFNEIDDERILE--DLNVDE 680 lEelFsakakkkkekksseksskskkkkkeisvLDpkrsQNiaIlLrkls +Ee+F++ka++++ + ss+k + ++k ++++++L+++r++N+aI+Lrk KIAA1902 681 FEEIFKTKAQGPAIDLSSSKQKIPQKGSNKVTLLEANRAKNLAITLRKA- 729 klppeeivqailemDedvLgvvlflkemldllenLlkmaPtkeElkklqe +++++ei++ai+ +D ++L+ +d++e+L++++Pt+ E+k l KIAA1902 730 GKTADEICKAIHVFDLKTLP--------VDFVECLMRFLPTENEVKVL-- 769 keykgdekspskLgraEqqFLlelskliprleeRlrallFkstFeeevee + y ++k+++ L+ ++ +F++++sk i+rl +++ ++F+ +F+e++++ KIAA1902 770 RLYERERKPLENLSDED-RFMMQFSK-IERLMQKMTIMAFIGNFAESIQM 817 lkpsletleaAseeLreSrkfkklLeliLalGNyMNsGtrrrGnAkGFkL l+p+l +++aAs ++++S+k+kk+Le+iLalGNyMNs +r G ++GFkL KIAA1902 818 LTPQLHAIIAASVSIKSSQKLKKILEIILALGNYMNSSKR--GAVYGFKL 865 ssLlKLsdvKstidnktTLLHflvkeieesEGkrlEeyrKLklpelldfs +sL+ L+d+Kst d+k+TLLH++ ++ e k+ +++ f+ KIAA1902 866 QSLDLLLDTKST-DRKQTLLHYISNVVKE------------KYHQVSLFY 902 seLshVekAakvdleeLeadvkeLekglkklekelelseeSkvsdeepsd +eL+ VekAa+v+le++ dvkeL++g++ ++e + + + KIAA1902 903 NELHYVEKAAAVSLENVLLDVKELQRGMDLTKREYTMHDH---------- 942 kFvevmkeFleeAeekldkLesllkeakelfkelteYFghggedpkdets + +keF+ + e kl+kL+++ k a+++f+++++YF ge+pk +t+ KIAA1902 943 --NTLLKEFILNNEGKLKKLQDDAKIAQDAFDDVVKYF---GENPK-TTP 986 peeFFkilrdFlnefk<-* p +FF ++ +F++++k KIAA1902 987 PSVFFPVFVRFVKAYK 1002 //