hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16024159/chunk_1/iprscan-20080502-16024159.nocrc
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Query sequence: KIAA1901
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 329.5    2.2e-94   1
SM00219                                                  77.5    1.7e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      11   264 ..     1   280 []    77.5  1.7e-18
SM00220    1/1      11   265 ..     1   231 []   329.5  2.2e-94

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 11 to 264: score 77.5, E = 1.7e-18
                   *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda.....kee
                       + ++k+GeG FG   k++l ++++++++  +K ++ +  +++++ee
    KIAA1901    11    YVRLQKIGEGSFG---KAILVkstedgRQYVIKEINISRmsskeREE 54   

                   FlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdL
                    +rE  ++ +   kHpNiV+      e        + l+ivm y+egGdL
    KIAA1901    55 SRREVAVLANM--KHPNIVQYRESFEEN-------GSLYIVMDYCEGGDL 95   

                   ldyLrknrpk.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvge
                    +++ + ++  ++ ++ l++ +QI+    + +++++ HRD+   N+ +++
    KIAA1901    96 FKRINAQKGVlFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTK 145  

                   nkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl
                   +++v  +DFG +R l +                  +        ++PE  
    KIAA1901   146 DGTVQLGDFGIARVLNST-------VELAR----TCI--GTPYYLSPEIC 182  

                   kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGy
                     + ++ kSD+W+ G +L+E++tl      g      s + ++ ++ +G 
    KIAA1901   183 ENKPYNNKSDIWALGCVLYELCTLKHAFEAG------SMKNLVLKIISGS 226  

                   RlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel.verl<-*
                    +p   +         + +l +l +q  +++P dRP+ + +  + +   
    KIAA1901   227 FPPVSLH--------YSYDLRSLVSQLFKRNPRDRPSVNSIlEKGF    264  

SM00220: domain 1 of 1, from 11 to 265: score 329.5, E = 2.2e-94
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Y  l+k+G+G+FGk  l++ +++gr++ iK+i+ ++ +++++e  +r
    KIAA1901    11    YVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINisrmsskerEESRR 57   

                   EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   E+++L + +HPNIV++ ++fe++++ly+Vm+yceG  GdLf+++  +++ 
    KIAA1901    58 EVAVLANmKHPNIVQYRESFEEnGSLYIVMDYCEG--GDLFKRINAQKG- 104  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl
                      + + E+++  +f Qi++aL++ H+++I+HRD+K +Ni+L+++++v l
    KIAA1901   105 ---VLFQEdQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKdgTVQL 151  

                   aDFGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcil
                   +DFG+Ar+l+++ +  +t++GTp+Y++PE++++++Y+  ++DiW+lGc+l
    KIAA1901   152 GDFGIARVLnstvelaRTCIGTPYYLSPEICenkPYNN-KSDIWALGCVL 200  

                   yElltGkpPFp...qldlifkkig..........SpeakdLikklLvkdP
                   yEl+t k  F+ ++  +l++k+i ++ ++ + ++S ++++L+++l++++P
    KIAA1901   201 YELCTLKHAFEagsMKNLVLKIISgsfppvslhySYDLRSLVSQLFKRNP 250  

                   ekRlta.eaLedeldikaHPff<-*
                   ++R++++ +Le         f+   
    KIAA1901   251 RDRPSVnSILE-------KGFI    265  

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