# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fk06803s1.fasta.huge -Q ../query/KIAA1899.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1899, 1032 aa
 vs ./tmplib.25089 library

1986473 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.3416+/-0.00484; mu= 20.1904+/- 0.330
 mean_var=90.8041+/-21.359, 0's: 0 Z-trim: 1  B-trim: 5 in 1/39
 Lambda= 0.134593

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1669  ( 1405 res)   fh18133                    (1405)  154 41.2  0.0012


>>KIAA1669  ( 1405 res)   fh18133                         (1405 aa)
 initn: 151 init1:  80 opt: 154  Z-score: 157.4  bits: 41.2 E(): 0.0012
Smith-Waterman score: 218;  23.653% identity (51.198% similar) in 334 aa overlap (257-588:300-583)

        230       240       250       260       270       280      
KIAA18 HVVHQYWTARPSQFPHSLHLHSNLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLL
                                     .: ..  : .:.  ::: : ......: .:
KIAA16 CPPGHREEPYLTEAGRDAFDKFCRLHQGELQLLAGGVLQAPQP-VLVKECELVKDVLNVL
     270       280       290       300       310        320        

         290       300       310       320       330       340     
KIAA18 SGV-KKLFIFQLIDGKVTVRNNIIVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGH
        :: .  : .       .:. .. :.  .   . :.: ..: ::    ::..:       
KIAA16 IGVVSATFSLCQPAQAFVVKRGVHVSGASPESISSLLSEVAEYGTCYTRLSHF-------
      330       340       350       360       370       380        

         350       360       370       380       390       400     
KIAA18 SSESMLPGSGSVPKKSTEAPFRTYQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAI
          :. :   :. .:.      ..:::  .: .:.  ..        :....  :..: .
KIAA16 ---SLQPVLDSLYSKGL-----VFQAFTSGLRRYLQYYR-------ACVLSTPPTLSL-L
                390            400       410              420      

         410        420       430       440       450       460    
KIAA18 VVDKLAPRLS-QLKVLHKVFSTGVAEVPPDTRNVVRASHLLNTLYKAILEYDNVGEASEQ
       ..  :  .:. ::. : .. ..: : .:    .  ::.   ..   . :  . . . :..
KIAA16 TIGFLFKKLGRQLRYLAELCGVG-AVLPGTCGGGPRAAFPTGVKLLSYLYQEALHNCSNE
         430       440        450       460       470       480    

          470       480       490       500       510       520    
KIAA18 TVSLLFSLWVETVRPYLQTVDEWIVHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYS
          .:.::   . .:: . . .:.  : . :.  ::.:: :..  .. ::  : :.    
KIAA16 HYPVLLSLLKTSCEPYTRFIHDWVYSGVFRDAYGEFMIQVNHEY-LSFRDKLYWTHGYVL
          490       500       510       520        530       540   

          530       540       550       560       570       580    
KIAA18 VSEKTENEEKMSDNASASSGSDQGPSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAE
       .:...:               :  :         ::: . ..: . ::...::: : : .
KIAA16 ISKEVE---------------DCVPV--------FLKHIAHDIYVCGKTINLLK-LCCPR
                          550               560       570          

          590       600       610       620       630       640    
KIAA18 STTCQAGARDAERKSLYTLFLESVQSRLRHGEDSTPQVLTEQQATKENLMKMQSIAESHL
          :                                                        
KIAA16 HYLCWSDVPVPRISVIFSLEELKEIEKDCAVYVGRMERVARHSSVSKEEKELRMEIAKQE
     580       590       600       610       620       630         




1032 residues in 1 query   sequences
1986473 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:21:20 2008 done: Thu Dec 18 15:21:21 2008
 Total Scan time:  0.670 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]