# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fk06427.fasta.huge -Q ../query/KIAA1898.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1898, 1013 aa
 vs ./tmplib.25089 library

1986492 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.2368+/-0.00616; mu= 8.5633+/- 0.411
 mean_var=390.8876+/-94.164, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.064871

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0975  ( 1528 res)   hj06890                    (1528)  319 44.8  0.0001


>>KIAA0975  ( 1528 res)   hj06890                         (1528 aa)
 initn: 446 init1: 168 opt: 319  Z-score: 176.5  bits: 44.8 E(): 0.0001
Smith-Waterman score: 377;  26.873% identity (50.814% similar) in 614 aa overlap (6-561:204-801)

                                        10        20               
KIAA18                          QFLFDVLQKTLSLKLVHVAGP-GPTG---------
                                     .:. :  :: ..:.:  :: :         
KIAA09 GPLQLYAVTEQLQQGKPTCASGDAKTDLGHILDFTCRLKYLKVSGTEGPFGTSNIQEQLL
           180       190       200       210       220       230   

          30        40        50        60        70        80     
KIAA18 PIKIFPFKSLRHLELRGVPLHCLHGLRGIYSQLETLICSRSLQALEELLSACGGDF----
       :. .  ::::...:.     . ..:: .    : ::    :  ...:.:   ...:    
KIAA09 PFDLSIFKSLHQVEISHCDAKHIRGLVASKPTLATLSVRFSATSMKEVLVPEASEFDEWE
           240       250       260       270       280       290   

                         90       100       110       120       130
KIAA18 ----------CSALP-WLALLSANFSYNALTALDSSLRLLSALRFLNLSHNQVQDCQGFL
                  ...: : :: . ..:.:... .: :..:.  ..::.:::: .   .. :
KIAA09 PEGTTLEGPVTAVIPTWQALTTLDLSHNSISEIDESVKLIPKIEFLDLSHNGLLVVDN-L
           300       310       320       330       340       350   

              140       150       160       170       180       190
KIAA18 MDLCELHHLDISYNRLHLVPRMGPSGAALGVLILRGNELRSLHGLEQLRNLRHLDLAYNL
       . : .: :::.:::.:  .  .  . . . .: : :: :.:: ::..: .: .:::  : 
KIAA09 QHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTLNLAGNLLESLSGLHKLYSLVNLDLRDNR
            360       370       380       390       400       410  

              200       210       220       230       240       250
KIAA18 LEGHRELSPLWLLAELRKLYLEGNPLWFHPEHRAATAQYLSPRARDAATGFLLDGKVLSL
       .:  .:.  .  :  :... : .::: . :..:. .   .. :: ..     ::  : . 
KIAA09 IEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVC----LDDTVTTE
            420       430       440       450       460            

              260       270       280              290             
KIAA18 TDFQTHTSLGLSPMGPPLPWPVGSTPETSGGPD--LSDS-----LSSGGVVT-------Q
        ...:   :     .  .   . :.:: .:: :  :: .      ::  .:.       :
KIAA09 KELDTVEVLKAIQKAKEVKSKL-SNPEKKGGEDSRLSAAPCIRPSSSPPTVAPASASLPQ
      470       480       490        500       510       520       

        300       310       320       330         340        350   
KIAA18 PLLHKVKSRVRVRRASISEPSDTDPEPRTLNPSPAGWF--VQQHPELELMSS-FRERFGR
       :.: .       ..:  :  :.::      .:   :    ... :  .  :. .:.  : 
KIAA09 PILSNQGIMFVQEEALASSLSSTDSLTPEHQPIAQGCSDSLESIPAGQAASDDLRDVPGA
       530       540       550       560       570       580       

           360                370           380       390       400
KIAA18 NWLQYRSHLEP-------SGNP--LPAT----PTTSAPSAPPASSQGPDTAPRPSPPQEE
              : ::       ::.   :: :     .:.       :.   ..  :  :   :
KIAA09 VGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQDFIQRLSTLIRQAIERQLPAWIE
       590       600       610       620       630       640       

              410       420       430         440       450        
KIAA18 ARGPQESPQKMSEEVRAEPQEEEEEKEGKEEK--EEGEMVEQGEEEAGEEEEEEQDQKEV
       : . .:  :  .:. . : .:::::..  :..  : :    . :: .:. ::::..... 
KIAA09 AANQREEGQ--GEQGEEEDEEEEEEEDVAENRYFEMGPPDVEEEEGGGQGEEEEEEEEDE
       650         660       670       680       690       700     

      460       470       480        490       500       510       
KIAA18 EAELCRPLLVCPLEGPEGVRGREC-FLRVTSAHLFEVELQAARTLERLELQSLEAAEIEP
       :::  :  :   : . :    ..  .:.:    :..:. .  .    : : ..  : .: 
KIAA09 EAEEERLALEWALGADEDFLLEHIRILKVLWCFLIHVQGSIRQFAACLVLTDFGIAVFEI
         710       720       730       740       750       760     

       520       530       540       550       560       570       
KIAA18 EAQAQRSPRPTGSDLLPGAPILSLRFSYICPDRQLRRYLVLEPDAHAAVQELLAVLTPVT
         : .:.   ... .:      :::: .  :  .: ..  : :.                
KIAA09 PHQESRG---SSQHILS-----SLRFVFCFPHGDLTEFGFLMPELCLVLKVRHSENTLFI
         770               780       790       800       810       

       580       590       600       610       620       630       
KIAA18 NVAREQLGEARDLLLGRFQCLRCGHEFKPEEPRMGLDSEEGWRPLFQKTESPAVCPNCGS
                                                                   
KIAA09 ISDAANLHEFHADLRSCFAPQHMAMLCSPILYGSHTSLQEFLRQLLTFYKVAGGCQERSQ
       820       830       840       850       860       870       




1013 residues in 1 query   sequences
1986492 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:21:17 2008 done: Thu Dec 18 15:21:18 2008
 Total Scan time:  0.720 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]