hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15555405/chunk_1/iprscan-20080502-15555405.nocrc
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Query sequence: KIAA1897
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00094 TIGR00094: conserved hypothetical protein T   261.2    1.2e-78   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00094   1/1     238   632 ..    90   544 .]   261.2  1.2e-78

Alignments of top-scoring domains:
TIGR00094: domain 1 of 1, from 238 to 632: score 261.2, E = 1.2e-78
                   *->kGefihitveKenwdTLevlrvlakfLgvsrreigFAGlKDKrAVTt
                      +G + h+ + Ken+dT+++++vl+k L+v    +++ G+KDKrA+T+
    KIAA1897   238    RGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITV 284  

                   QwvSclkvklePLeepdlsnfqlkgvkilevnyhnrKirLGdLkGNrFri
                   Q +  lk+++    ++  +n  l + k++++ y ++ ++LG L GN F++
    KIAA1897   285 QEIAVLKITAQ---RLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTV 331  

                   riRdveilnsdeslketLnelcklLSEkGfPNYFGlQRFGsiRiiTHlVG
                   ++R  + + +d  ++++ n l +     Gf+NY+G+QRFG++ + T  VG
    KIAA1897   332 VLRNIT-GTDDQ-VQQAMNSLKE----IGFINYYGMQRFGTTAVPTYQVG 375  

                   RlllesdweganhqyalkplqgetkvskeaRrifdeskdaksaLfnlpka
                   R++l++ w +  ++++      e     + R+ ++ +kd   aL++lp+ 
    KIAA1897   376 RAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPTAALRKLPVK 425  

                   lRyErallnsllegkkeEDGeySdnsylaAimsLpknlktmfvhAYQsYl
                      E  ll+ l+            +  + A++++p+n + m++h YQsY+
    KIAA1897   426 RCVEGQLLRGLSKY--------GMKNIVSAFGIIPRNNRLMYIHSYQSYV 467  

                   FNrlvserielmgtaplpGdividtslidklrsiidDadedEveeealrf
                   +N  vs+rie +g++p+pGd+     +                   a  +
    KIAA1897   468 WNNMVSKRIEDYGLKPVPGDL-----VLK--------------GATATYI 498  

                   ekkevaaelaldvklAydrkkelleriaLdvlsvSlEdfkalrvpkLlsd
                   e   v+  ++ d         ++++ +++dv ++   ++  +++ +L +d
    KIAA1897   499 EEDDVNNYSIHD---------VVMPLPGFDVIYPKH-KIQEAYREMLTAD 538  

                   hakalgsrrfswdfweegssetVkqKPKSLEYRiiHYDDPSqqLVNTDLD
                   + +  ++r +++d+++ g ++ ++ +P+ + + ++ YDDP   L NTD+D
    KIAA1897   539 NLDIDNMRHKIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVD 588  

                   iLNNTR..AKESGqKYmKAKLDRYmPDKGGEktdleLkFyLPkGsYATsv
                    L    ++   S  KY                 +l   F+LP + YAT++
    KIAA1897   589 NLEGKTppVFASEGKYR----------------ALKMDFSLPPSTYATMA 622  

                   LRElikkege<-*
                    RE +k +++   
    KIAA1897   623 IREVLKMDTS    632  

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