hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15555405/chunk_1/iprscan-20080502-15555405.nocrc
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Query sequence: KIAA1897
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01142.9.fs tRNA pseudouridine synthase D (TruD)           213.2    5.4e-61   1
PF01142.9.ls tRNA pseudouridine synthase D (TruD)           199.8    5.8e-57   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01142.9.ls   1/1     206   631 ..     1   475 []   199.8  5.8e-57
PF01142.9.fs   1/1     234   631 ..    32   475 .]   213.2  5.4e-61

Alignments of top-scoring domains:
PF01142.9.ls: domain 1 of 1, from 206 to 631: score 199.8, E = 5.8e-57
                   *->eellyltgtpgiggrlkae.PeDFiVeEvlgyepsdWKGgeGehlll
                       ++  ++ ++g+++  k+++++D    ++   ++s     +G ++++
    KIAA1897   206    KKYIVAYHAAGKKALAKVRtAAD---PRKHSWPKS-----RGSYCHF 244  

                   lvrKrgwdTlfaareLAkaLgisqrrisYAGlKDkrAvTtQwfSlhlpkk
                    + K+++dT++a+++L+k L+++++ +sY G+KDkrA+T Q +   + k 
    KIAA1897   245 VLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIA--VLKI 292  

                   eapdlsafnsqlkgvkilelgrhsrKLrlGdLkGNrFvIrlrgasgeeae
                    a++l+ +n  l ++k+   ++ +++L+lG L+GN+F+++lr ++g   +
    KIAA1897   293 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNITG-TDD 341  

                   klkqrLeeiaekilkvlekGGvPNYFGsQRFGsrrsvTHivGKlivlgdw
                   ++ q+ + ++e         G++NY+G QRFG+    T  vG++i+++ w
    KIAA1897   342 QVQQAMNSLKEI--------GFINYYGMQRFGTTAVPTYQVGRAILQNSW 383  

                   EkAakvvklyvtkpfegEseevkdaRrflkegrGnlkeALeefPkrlryE
                    +     +l++ +    E+    + R++  +++ + + AL+++P +  +E
    KIAA1897   384 TEV---MDLILKPRSGAEKGYLVKCREEWAKTK-DPTAALRKLPVKRCVE 429  

                   rniLkkLskgrslfdrwykgalralprnlrsffvsAyQSYLFNrilSrRi
                   + +L+ Lsk +    + +  a+  +prn r +++++yQSY +N ++S+Ri
    KIAA1897   430 GQLLRGLSKYGM---KNIVSAFGIIPRNNRLMYIHSYQSYVWNNMVSKRI 476  

                   elskiaeFSKEliyKVeeetrvlkeqfgfnraleGDilqlydsgswFlae
                   e                        ++g +++++GD + +        a+
    KIAA1897   477 E------------------------DYG-LKPVPGDLVLKG-------AT 494  

                   kkekvtevdldalnerilagevs......ptgpLpGekvlpssgsageiE
                   +++             i++++v++ + +++  pLpG++v + +    e  
    KIAA1897   495 ATY-------------IEEDDVNnysihdVVMPLPGFDVIYPKHKIQEAY 531  

                   keiLeeegvllelFklkekelpelasmrgsRRalllkpqnLkwkyvgdse
                   +e L  ++++  +++ k+  ++    + g++R + ++pqn++w++v ++ 
    KIAA1897   532 REMLTADNLDIDNMRHKIRDYS----LSGAYRKIIIRPQNVSWEVVAYD- 576  

                   EdELnpekdt..........................ltleFsLPkGsYAT
                         ++  +  +++ ++ ++++++   ++++ + l+++FsLP+  YAT
    KIAA1897   577 ------DPKIplfntdvdnlegktppvfasegkyraLKMDFSLPPSTYAT 620  

                   svLREilktdp<-*
                    ++RE+lk d    
    KIAA1897   621 MAIREVLKMDT    631  

PF01142.9.fs: domain 1 of 1, from 234 to 631: score 213.2, E = 5.4e-61
                   *->epsdWKGgeGehllllvrKrgwdTlfaareLAkaLgisqrrisYAGl
                      +p      +G ++++ + K+++dT++a+++L+k L+++++ +sY G+
    KIAA1897   234    WPK----SRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGT 276  

                   KDkrAvTtQwfSlhlpkkeapdlsafnsqlkgvkilelgrhsrKLrlGdL
                   KDkrA+T Q +   + k  a++l+ +n  l ++k+   ++ +++L+lG L
    KIAA1897   277 KDKRAITVQEIA--VLKITAQRLAHLNKCLMNFKLGNFSYQKNPLKLGEL 324  

                   kGNrFvIrlrgasgeeaeklkqrLeeiaekilkvlekGGvPNYFGsQRFG
                   +GN+F+++lr ++g   +++ q+ + ++e         G++NY+G QRFG
    KIAA1897   325 QGNHFTVVLRNITG-TDDQVQQAMNSLKEI--------GFINYYGMQRFG 365  

                   srrsvTHivGKlivlgdwEkAakvvklyvtkpfegEseevkdaRrflkeg
                   +    T  vG++i+++ w +     +l++ +    E+    + R++  ++
    KIAA1897   366 TTAVPTYQVGRAILQNSWTEV---MDLILKPRSGAEKGYLVKCREEWAKT 412  

                   rGnlkeALeefPkrlryErniLkkLskgrslfdrwykgalralprnlrsf
                   + + + AL+++P +  +E+ +L+ Lsk +    + +  a+  +prn r +
    KIAA1897   413 K-DPTAALRKLPVKRCVEGQLLRGLSKYGM---KNIVSAFGIIPRNNRLM 458  

                   fvsAyQSYLFNrilSrRielskiaeFSKEliyKVeeetrvlkeqfgfnra
                   ++++yQSY +N ++S+Rie                        ++g +++
    KIAA1897   459 YIHSYQSYVWNNMVSKRIE------------------------DYG-LKP 483  

                   leGDilqlydsgswFlaekkekvtevdldalnerilagevs......ptg
                   ++GD + +        a++++             i++++v++ + +++  
    KIAA1897   484 VPGDLVLKG-------ATATY-------------IEEDDVNnysihdVVM 513  

                   pLpGekvlpssgsageiEkeiLeeegvllelFklkekelpelasmrgsRR
                   pLpG++v + +    e  +e L  ++++  +++ k+  ++    + g++R
    KIAA1897   514 PLPGFDVIYPKHKIQEAYREMLTADNLDIDNMRHKIRDYS----LSGAYR 559  

                   alllkpqnLkwkyvgdseEdELnpekdt......................
                    + ++pqn++w++v ++       ++  +  +++ ++ ++++++   +++
    KIAA1897   560 KIIIRPQNVSWEVVAYD-------DPKIplfntdvdnlegktppvfaseg 602  

                   ....ltleFsLPkGsYATsvLREilktdp<-*
                   + + l+++FsLP+  YAT ++RE+lk d    
    KIAA1897   603 kyraLKMDFSLPPSTYATMAIREVLKMDT    631  

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