hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15464476/chunk_1/iprscan-20080502-15464476.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1892 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00320 42.8 4.5e-08 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00320 1/4 100 139 .. 1 46 [] 1.7 2.6e+02 SM00320 2/4 195 234 .. 1 46 [] 29.2 0.00056 SM00320 3/4 259 303 .. 1 46 [] 11.4 7.8 SM00320 4/4 351 389 .. 1 46 [] 0.5 4.1e+02 Alignments of top-scoring domains: SM00320: domain 1 of 4, from 100 to 139: score 1.7, E = 2.6e+02 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl + r+++ g + V + ++ + +++++g + +t+ + KIAA1892 100 SlLKEREFHlGTLN--KVFASQWLNH-------RQVVCGTkCNTLFV 137 Wd<-* d KIAA1892 138 VD 139 SM00320: domain 2 of 4, from 195 to 234: score 29.2, E = 0.00056 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl t ++++ ++gH++ ++ s+a+ +d ++ +sgs+Dg+ l KIAA1892 195 TlDPVCVGDdGHKD--WIFSIAWISD-------TMAVSGSrDGSMGL 232 Wd<-* W+ KIAA1892 233 WE 234 SM00320: domain 3 of 4, from 259 to 303: score 11.4, E = 7.8 *->t.kllrtlk.gHtge..spVtsvafspdggssdspnllasgs.Dgti t+k l+ +++ t+++++ V+++af+ + + l + s Dg KIAA1892 259 ThKALKDIPkEDTNPdnCKVRALAFNNKN------KELGAVSlDGYF 299 rlWd<-* +lW+ KIAA1892 300 HLWK 303 SM00320: domain 4 of 4, from 351 to 389: score 0.5, E = 4.1e+02 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + ++ ++++ +g s+++sv+f + ++ +g + g++ ++ KIAA1892 351 SyNVKSVCSRERG-SGIRSVSFYEH--------IITVGTgQGSLLFY 388 d<-* d KIAA1892 389 D 389 //