hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15464476/chunk_1/iprscan-20080502-15464476.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1892 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00400.22.fs WD domain, G-beta repeat 30.2 1.5e-07 2 PF00400.22.ls WD domain, G-beta repeat 32.7 1.2e-06 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00400.22.fs 1/2 196 234 .. 1 38 [] 25.3 3.7e-06 PF00400.22.ls 1/2 196 234 .. 1 38 [] 27.2 5.2e-05 Alignments of top-scoring domains: PF00400.22.fs: domain 1 of 2, from 196 to 234: score 25.3, E = 3.7e-06 *->geck.vl..gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++ v ++gH++++ ++a+ d ++ +sgSrDg+ +W+ KIAA1892 196 LDPVcVGddGHKDWIFSIAWISD--TMAVSGSRDGSMGLWE 234 PF00400.22.ls: domain 1 of 2, from 196 to 234: score 27.2, E = 5.2e-05 *->geck.vl..gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++ v ++gH++++ ++a+ d ++ +sgSrDg+ +W+ KIAA1892 196 LDPVcVGddGHKDWIFSIAWISD--TMAVSGSRDGSMGLWE 234 //