hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15431342/chunk_1/iprscan-20080502-15431342.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1890 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00042 553.5 8.6e-162 5 SM00032 328.2 5.5e-94 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00032 1/6 81 136 .. 1 79 [] 53.0 3.8e-11 SM00042 1/5 140 248 .. 1 144 [] 111.5 9.4e-29 SM00032 2/6 253 309 .. 1 79 [] 56.5 3.4e-12 SM00042 2/5 313 422 .. 1 144 [] 118.0 1e-30 SM00032 3/6 427 483 .. 1 79 [] 58.2 1.1e-12 SM00042 3/5 487 595 .. 1 144 [] 131.1 1.2e-34 SM00032 4/6 600 657 .. 1 79 [] 55.9 5.2e-12 SM00042 4/5 661 769 .. 1 144 [] 65.8 5.5e-15 SM00032 5/6 777 834 .. 1 79 [] 53.4 2.9e-11 SM00042 5/5 838 946 .. 1 144 [] 127.0 2.1e-33 SM00032 6/6 951 1006 .. 1 79 [] 51.2 1.4e-10 Alignments of top-scoring domains: SM00032: domain 1 of 6, from 81 to 136: score 53.0, E = 3.8e-11 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ ++ r ++ + + +G+++t+sC GY+l KIAA1890 81 CDdPG---VPAFSRRIGFH----------FGVGDSLTFSCFLGYRLE 114 GgsqpekSrestsstitCtsn....WspppsgplPtC<-* G + +tC+ ++++ Ws p P+C KIAA1890 115 G-----------ATKLTCLGGgrrvWSAPL----PRC 136 SM00042: domain 1 of 5, from 140 to 248: score 111.5, E = 9.4e-29 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CG ++++++ Gt+ SPn+P++ Y+nn eC++ I+++ G KIAA1890 140 CGASVKGNE------GTLLSPNFPSN-----YDNNHECIYKIETEAG 175 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG + i+L+ + F+l D +++yDG + ss+ lG KIAA1890 176 KGIHLRTRS---FQLFEG--------------DTLKVYDGKD-SSSRPLG 207 ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav +f +e i+ S+sN+++++F +++s++ +GF+++Y+++ KIAA1890 208 ----TFTKNEllGlILNSTSNHLWLEFNTNGSDT-----DQGFQLTYTSF 248 <-* KIAA1890 - - SM00032: domain 2 of 6, from 253 to 309: score 56.5, E = 3.4e-12 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P+ + +G+ + + + + ++v ysCnpGY ++ KIAA1890 253 CEdPG---IPNYGYRIRDE---------GHFTDTVVLYSCNPGYAMH 287 GgsqpekSrestsstitCtsn....WspppsgplPtC<-* G s+t+tC+s++++ W+ p P+C KIAA1890 288 G-----------SNTLTCLSGdrrvWDKPL----PSC 309 SM00042: domain 2 of 5, from 313 to 422: score 118.0, E = 1e-30 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg + a++s G+i SP+YP + Y+nnl+C+W+I+a pG KIAA1890 313 CGGQIHAATS-----GRILSPGYPAP-----YDNNLHCTWIIEADPG 349 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG ++i+L+F Fd+E + D ++++DGp +s ll KIAA1890 350 KTISLHFIV---FDTEM-------------AHDILKVWDGPV-DSDILLK 382 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< +Gs p+ i S+ Ns+t++F sD+ ++ k+GFs+++s+ KIAA1890 383 ----EWSGSAlPeDIHSTFNSLTLQFDSDFFIS-----KSGFSIQFSTS 422 -* KIAA1890 - - SM00032: domain 3 of 6, from 427 to 483: score 58.2, E = 1.1e-12 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P+ +++nG+ + ++ + G+tvt++C+pGY+l+ KIAA1890 427 CNdPG---MPQNGTRYG----------DSREAGDTVTFQCDPGYQLQ 460 GgsqpekSrestsstitCtsn.....WspppsgplPtC<-* G + itC +++ W p p PtC KIAA1890 461 G-----------QAKITCVQLnnrffWQPDP----PTC 483 SM00042: domain 3 of 5, from 487 to 595: score 131.1, E = 1.2e-34 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+lt++ G+i SPnYP++ Yp+++eC W++++ p KIAA1890 487 CGGNLTGPA------GVILSPNYPQP-----YPPGKECDWRVKVNPD 522 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG ++i L F + F++E+s yD++ iy+G++ spl+G KIAA1890 523 FVIALIFKS---FNMEPS-------------YDFLHIYEGED-SNSPLIG 555 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< + Gs+ p+ i Ss+Ns+++ F+sD sv +GF + + KIAA1890 556 ----SYQGSQaPeRIESSGNSLFLAFRSDASVG-----LSGFAIEFKEK 595 -* KIAA1890 - - SM00032: domain 4 of 6, from 600 to 657: score 55.9, E = 5.2e-12 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P+ i+nG+ ++++ ++ Gst+ty+C++GY++ KIAA1890 600 CFdPG---NIMNGTRVGTD----------FKLGSTITYQCDSGYKIL 633 GgsqpekSrestsstitCtsn......WspppsgplPtC<-* +s+itC + +++++W+ P+C KIAA1890 634 D-----------PSSITCVIGadgkpsWDQVL----PSC 657 SM00042: domain 4 of 5, from 661 to 769: score 65.8, E = 5.5e-15 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg t+s+ G++ SPnYP + Y ++ C + I++p+ KIAA1890 661 CGGQYTGSE------GVVLSPNYPHN-----YTAGQICLYSITVPKE 696 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG +++ +F + F++ + D e +DG + ++ll KIAA1890 697 FVVFGQFAY---FQTALN--------------DLAELFDGTH-AQARLLS 728 ntearfCGse...p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsa ++Gs +++ + + sN+++++F+ s+ + +rGF+ Y+a KIAA1890 729 ----SLSGSHsgeTlPLAT-SNQILLRFSAKSGAS-----ARGFHFVYQA 768 v<-* v KIAA1890 769 V 769 SM00032: domain 5 of 6, from 777 to 834: score 53.4, E = 2.9e-11 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++ p ++ +Gr ++s+ +s Gs v+++CnpGY l+ KIAA1890 777 CSsVP---EPRYGRRIGSE----------FSAGSIVRFECNPGYLLQ 810 GgsqpekSrestsstitCtsn......WspppsgplPtC<-* G s+ ++C+s ++ +W++++ P+C KIAA1890 811 G-----------STALHCQSVpnalaqWNDTI----PSC 834 SM00042: domain 5 of 5, from 838 to 946: score 127.0, E = 2.1e-33 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG C+g++t Gti SP+YP++ Y nnl+C+W I +++G KIAA1890 838 CSGNFTQRR------GTILSPGYPEP-----YGNNLNCIWKIIVTEG 873 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG + i+++ + F +E +D +ei+DG + +++p+lG KIAA1890 874 SGIQIQVIS---FATEQ-------------NWDSLEIHDGGD-VTAPRLG 906 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< f+G++ p ++ S+sN+++++F+sD sv + GF++ Y +v KIAA1890 907 ----SFSGTTvPaLLNSTSNQLYLHFQSDISVA-----AAGFHLEYKTV 946 -* KIAA1890 - - SM00032: domain 6 of 6, from 951 to 1006: score 51.2, E = 1.4e-10 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P + n + ++ ++y ++++++++C+pGYtl+ KIAA1890 951 CQePA---LPSNSIKIG----------DRYMVNDVLSFQCEPGYTLQ 984 GgsqpekSrestsstitCtsn....WspppsgplPtC<-* G s+i C++++ ++W+ p P C KIAA1890 985 G-----------RSHISCMPGtvrrWNYPS----PLC 1006 //