hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15431342/chunk_1/iprscan-20080502-15431342.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1890 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00431.11.fs CUB domain 530.8 1e-160 7 PF00431.11.ls CUB domain 485.8 4.8e-143 5 PF00084.11.ls Sushi domain (SCR repeat) 251.9 1.2e-72 6 PF00084.11.fs Sushi domain (SCR repeat) 241.0 2.4e-69 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00084.11.fs 1/6 81 136 .. 1 65 [] 42.1 7.8e-10 PF00084.11.ls 1/6 81 136 .. 1 65 [] 43.9 5.2e-10 PF00431.11.ls 1/5 140 245 .. 1 116 [] 78.5 1.9e-20 PF00431.11.fs 2/7 140 245 .. 1 116 [] 76.6 6.5e-23 PF00084.11.ls 2/6 253 309 .. 1 65 [] 40.6 5e-09 PF00084.11.fs 2/6 253 309 .. 1 65 [] 38.8 5.4e-09 PF00431.11.ls 2/5 313 419 .. 1 116 [] 104.5 2.8e-28 PF00431.11.fs 3/7 313 419 .. 1 116 [] 102.6 8.4e-31 PF00084.11.fs 3/6 427 483 .. 1 65 [] 38.4 6.8e-09 PF00084.11.ls 3/6 427 483 .. 1 65 [] 40.2 6.6e-09 PF00431.11.fs 4/7 487 592 .. 1 116 [] 135.8 7.1e-41 PF00431.11.ls 3/5 487 592 .. 1 116 [] 137.7 2.9e-38 PF00084.11.ls 4/6 600 657 .. 1 65 [] 50.8 4.3e-12 PF00084.11.fs 4/6 600 657 .. 1 65 [] 48.9 1.3e-11 PF00431.11.fs 5/7 661 766 .. 1 116 [] 53.4 7.2e-16 PF00431.11.ls 4/5 661 766 .. 1 116 [] 55.3 1.9e-13 PF00084.11.fs 5/6 777 834 .. 1 65 [] 36.8 1.7e-08 PF00084.11.ls 5/6 777 834 .. 1 65 [] 38.6 2e-08 PF00431.11.fs 6/7 838 943 .. 1 116 [] 107.7 2.3e-32 PF00431.11.ls 5/5 838 943 .. 1 116 [] 109.7 8e-30 PF00084.11.fs 6/6 951 1006 .. 1 65 [] 36.0 2.7e-08 PF00084.11.ls 6/6 951 1006 .. 1 65 [] 37.9 3.3e-08 PF00431.11.fs 7/7 1010 1046 .. 1 40 [. 43.3 8.4e-13 Alignments of top-scoring domains: PF00084.11.fs: domain 1 of 6, from 81 to 136: score 42.1, E = 7.8e-10 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+++ + r + + + Gd++t++C GYrl+G + +tC+ KIAA1890 81 CD-DPGVPAFSRRIGF--HFGV--GDSLTFSCFLGYRLEGATKLTCL 122 edgg.GgWsppllgelPkC<-* +gg+ Ws pl P+C KIAA1890 123 -GGGrRVWSAPL----PRC 136 PF00084.11.ls: domain 1 of 6, from 81 to 136: score 43.9, E = 5.2e-10 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+++ + r + + + Gd++t++C GYrl+G + +tC+ KIAA1890 81 CD-DPGVPAFSRRIGF--HFGV--GDSLTFSCFLGYRLEGATKLTCL 122 edgg.GgWsppllgelPkC<-* +gg+ Ws pl P+C KIAA1890 123 -GGGrRVWSAPL----PRC 136 PF00431.11.ls: domain 1 of 5, from 140 to 245: score 78.5, E = 1.9e-20 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CG ++ G++ SPn+P+ +Y +n eC++ I+++ g+ i+L+ KIAA1890 140 CGAS--VKGNEGTLLSPNFPS-NYDNNHECIYKIETEAGKG-IHLRT 182 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +F l D ++++DG +sss lG f+ ++ + Stsn + KIAA1890 183 RSFQLF------EGDTLKVYDGKDSSSRPLGTFTKNELLGLILNSTSNHL 226 tikFvsDssiqkrGFkaty<-* +++F + +s + GF++ty KIAA1890 227 WLEFNTNGSDTDQGFQLTY 245 PF00431.11.fs: domain 2 of 7, from 140 to 245: score 76.6, E = 6.5e-23 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CG ++ G++ SPn+P+ +Y +n eC++ I+++ g+ i+L+ KIAA1890 140 CGAS--VKGNEGTLLSPNFPS-NYDNNHECIYKIETEAGKG-IHLRT 182 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +F l D ++++DG +sss lG f+ ++ + Stsn + KIAA1890 183 RSFQLF------EGDTLKVYDGKDSSSRPLGTFTKNELLGLILNSTSNHL 226 tikFvsDssiqkrGFkaty<-* +++F + +s + GF++ty KIAA1890 227 WLEFNTNGSDTDQGFQLTY 245 PF00084.11.ls: domain 2 of 6, from 253 to 309: score 40.6, E = 5e-09 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C P i+N ++ ++ + ++ ++v y+Cn+GY + Gs+++tC KIAA1890 253 CE--DPGIPNYGYRIRdEGHFTD---TVVLYSCNPGYAMHGSNTLTC 294 tedggGgWsppllgelPkC<-* + ++ W+ pl P+C KIAA1890 295 LSGDRRVWDKPL----PSC 309 PF00084.11.fs: domain 2 of 6, from 253 to 309: score 38.8, E = 5.4e-09 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C P i+N ++ ++ + ++ ++v y+Cn+GY + Gs+++tC KIAA1890 253 CE--DPGIPNYGYRIRdEGHFTD---TVVLYSCNPGYAMHGSNTLTC 294 tedggGgWsppllgelPkC<-* + ++ W+ pl P+C KIAA1890 295 LSGDRRVWDKPL----PSC 309 PF00431.11.ls: domain 2 of 5, from 313 to 419: score 104.5, E = 2.8e-28 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg++ ++sG I SP+YP pY +n +C+W+I+a pg++ isL+F KIAA1890 313 CGGQI-HAATSGRILSPGYPA-PYDNNLHCTWIIEADPGKT-ISLHF 356 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm Fd+E + D ++++DG+ +s ll G s +Pedi St n++ KIAA1890 357 IVFDTE-----MAHDILKVWDGPVDSDILLKEWSG-SALPEDIHSTFNSL 400 tikFvsDssiqkrGFkaty<-* t+ F sD i+k+GF++ + KIAA1890 401 TLQFDSDFFISKSGFSIQF 419 PF00431.11.fs: domain 3 of 7, from 313 to 419: score 102.6, E = 8.4e-31 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg++ ++sG I SP+YP pY +n +C+W+I+a pg++ isL+F KIAA1890 313 CGGQI-HAATSGRILSPGYPA-PYDNNLHCTWIIEADPGKT-ISLHF 356 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm Fd+E + D ++++DG+ +s ll G s +Pedi St n++ KIAA1890 357 IVFDTE-----MAHDILKVWDGPVDSDILLKEWSG-SALPEDIHSTFNSL 400 tikFvsDssiqkrGFkaty<-* t+ F sD i+k+GF++ + KIAA1890 401 TLQFDSDFFISKSGFSIQF 419 PF00084.11.fs: domain 3 of 6, from 427 to 483: score 38.4, E = 6.8e-09 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C +p+ ++NG+ + e Gdtvt++C++GY+l+G + itC+ KIAA1890 427 CN-DPGMPQNGTRYGD--SREA--GDTVTFQCDPGYQLQGQAKITCV 468 edgg.GgWsppllgelPkC<-* + + W p + P+C KIAA1890 469 QLNNrFFWQPDP----PTC 483 PF00084.11.ls: domain 3 of 6, from 427 to 483: score 40.2, E = 6.6e-09 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C +p+ ++NG+ + e Gdtvt++C++GY+l+G + itC+ KIAA1890 427 CN-DPGMPQNGTRYGD--SREA--GDTVTFQCDPGYQLQGQAKITCV 468 edgg.GgWsppllgelPkC<-* + + W p + P+C KIAA1890 469 QLNNrFFWQPDP----PTC 483 PF00431.11.fs: domain 4 of 7, from 487 to 592: score 135.8, E = 7.1e-41 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ lt + G+I SPnYP pYpp keC W++ ++p + i L F KIAA1890 487 CGGN--LTGPAGVILSPNYPQ-PYPPGKECDWRVKVNPDFV-IALIF 529 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +F+ E YD++ i++G++s+spl+G++ G s++Pe i S++n++ KIAA1890 530 KSFNME-----PSYDFLHIYEGEDSNSPLIGSYQG-SQAPERIESSGNSL 573 tikFvsDssiqkrGFkaty<-* ++ F sD+s+ +GF++ + KIAA1890 574 FLAFRSDASVGLSGFAIEF 592 PF00431.11.ls: domain 3 of 5, from 487 to 592: score 137.7, E = 2.9e-38 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ lt + G+I SPnYP pYpp keC W++ ++p + i L F KIAA1890 487 CGGN--LTGPAGVILSPNYPQ-PYPPGKECDWRVKVNPDFV-IALIF 529 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +F+ E YD++ i++G++s+spl+G++ G s++Pe i S++n++ KIAA1890 530 KSFNME-----PSYDFLHIYEGEDSNSPLIGSYQG-SQAPERIESSGNSL 573 tikFvsDssiqkrGFkaty<-* ++ F sD+s+ +GF++ + KIAA1890 574 FLAFRSDASVGLSGFAIEF 592 PF00084.11.ls: domain 4 of 6, from 600 to 657: score 50.8, E = 4.3e-12 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C +p++i+NG+ + + ++ G+t+ty+C+ GY + +ssitC+ KIAA1890 600 CF-DPGNIMNGTRVGT--DFKL--GSTITYQCDSGYKILDPSSITCV 641 edg.g.GgWsppllgelPkC<-* + +g+ +W++ l P+C KIAA1890 642 IGAdGkPSWDQVL----PSC 657 PF00084.11.fs: domain 4 of 6, from 600 to 657: score 48.9, E = 1.3e-11 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C +p++i+NG+ + + ++ G+t+ty+C+ GY + +ssitC+ KIAA1890 600 CF-DPGNIMNGTRVGT--DFKL--GSTITYQCDSGYKILDPSSITCV 641 edg.g.GgWsppllgelPkC<-* + +g+ +W++ l P+C KIAA1890 642 IGAdGkPSWDQVL----PSC 657 PF00431.11.fs: domain 5 of 7, from 661 to 766: score 53.4, E = 7.2e-16 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ +t s G+ SPnYP+ +Y + C + I++p+++ ++ +F KIAA1890 661 CGGQ--YTGSEGVVLSPNYPH-NYTAGQICLYSITVPKEFV-VFGQF 703 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedi.rStsnq +F + D E +DG ++ + ll + G s+ e+ + tsnq KIAA1890 704 AYFQTA------LNDLAELFDGTHAQARLLSSLSG-SHSGETLpLATSNQ 746 mtikFvsDssiqkrGFkaty<-* +++F+ s+ ++rGF+ y KIAA1890 747 ILLRFSAKSGASARGFHFVY 766 PF00431.11.ls: domain 4 of 5, from 661 to 766: score 55.3, E = 1.9e-13 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ +t s G+ SPnYP+ +Y + C + I++p+++ ++ +F KIAA1890 661 CGGQ--YTGSEGVVLSPNYPH-NYTAGQICLYSITVPKEFV-VFGQF 703 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedi.rStsnq +F + D E +DG ++ + ll + G s+ e+ + tsnq KIAA1890 704 AYFQTA------LNDLAELFDGTHAQARLLSSLSG-SHSGETLpLATSNQ 746 mtikFvsDssiqkrGFkaty<-* +++F+ s+ ++rGF+ y KIAA1890 747 ILLRFSAKSGASARGFHFVY 766 PF00084.11.fs: domain 5 of 6, from 777 to 834: score 36.8, E = 1.7e-08 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ ++P+++ Gr + s +++ G+ v+++Cn+GY l+Gs+ ++C+ KIAA1890 777 CS-SVPEPRYGRRIGS--EFSA--GSIVRFECNPGYLLQGSTALHCQ 818 edg.g.GgWsppllgelPkC<-* + +W+ ++ P+C KIAA1890 819 SVPnAlAQWNDTI----PSC 834 PF00084.11.ls: domain 5 of 6, from 777 to 834: score 38.6, E = 2e-08 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ ++P+++ Gr + s +++ G+ v+++Cn+GY l+Gs+ ++C+ KIAA1890 777 CS-SVPEPRYGRRIGS--EFSA--GSIVRFECNPGYLLQGSTALHCQ 818 edg.g.GgWsppllgelPkC<-* + +W+ ++ P+C KIAA1890 819 SVPnAlAQWNDTI----PSC 834 PF00431.11.fs: domain 6 of 7, from 838 to 943: score 107.7, E = 2.3e-32 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF C+g+ +t+ G+I SP+YP+ pY +n +C+W I +++g+ i+++ KIAA1890 838 CSGN--FTQRRGTILSPGYPE-PYGNNLNCIWKIIVTEGSG-IQIQV 880 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +F +E + D++Ei DG + ++p lG+f G P+ Stsnq+ KIAA1890 881 ISFATE-----QNWDSLEIHDGGDVTAPRLGSFSG-TTVPALLNSTSNQL 924 tikFvsDssiqkrGFkaty<-* ++ F+sD s++++GF++ y KIAA1890 925 YLHFQSDISVAAAGFHLEY 943 PF00431.11.ls: domain 5 of 5, from 838 to 943: score 109.7, E = 8e-30 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF C+g+ +t+ G+I SP+YP+ pY +n +C+W I +++g+ i+++ KIAA1890 838 CSGN--FTQRRGTILSPGYPE-PYGNNLNCIWKIIVTEGSG-IQIQV 880 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +F +E + D++Ei DG + ++p lG+f G P+ Stsnq+ KIAA1890 881 ISFATE-----QNWDSLEIHDGGDVTAPRLGSFSG-TTVPALLNSTSNQL 924 tikFvsDssiqkrGFkaty<-* ++ F+sD s++++GF++ y KIAA1890 925 YLHFQSDISVAAAGFHLEY 943 PF00084.11.fs: domain 6 of 6, from 951 to 1006: score 36.0, E = 2.7e-08 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C P ++ +++ + + y + +d+++++C++GY+l+G s+i C+ KIAA1890 951 CQ--EPALPSNSIKIG-DRYMV--NDVLSFQCEPGYTLQGRSHISCM 992 edgg.GgWsppllgelPkC<-* ++ + +W+ p P C KIAA1890 993 PG-TvRRWNYPS----PLC 1006 PF00084.11.ls: domain 6 of 6, from 951 to 1006: score 37.9, E = 3.3e-08 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C P ++ +++ + + y + +d+++++C++GY+l+G s+i C+ KIAA1890 951 CQ--EPALPSNSIKIG-DRYMV--NDVLSFQCEPGYTLQGRSHISCM 992 edgg.GgWsppllgelPkC<-* ++ + +W+ p P C KIAA1890 993 PG-TvRRWNYPS----PLC 1006 PF00431.11.fs: domain 7 of 7, from 1010 to 1046: score 43.3, E = 8.4e-13 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgy<-* CGg+ l + G+I SP++P +Yp+n +C+W+I++p gy KIAA1890 1010 CGGT--LSTLGGVILSPGFPG-SYPNNLDCTWRISLPIGY 1046 //