# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fk01837.fasta.huge -Q ../query/KIAA1886.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1886, 655 aa vs ./tmplib.25089 library 1986850 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 12.1608+/-0.00641; mu= -18.3080+/- 0.424 mean_var=530.0354+/-128.287, 0's: 0 Z-trim: 3 B-trim: 8 in 1/39 Lambda= 0.055709 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1224 ( 997 res) fh02652 ( 997) 2711 232.8 1.1e-61 >>KIAA1224 ( 997 res) fh02652 (997 aa) initn: 2522 init1: 1001 opt: 2711 Z-score: 1199.0 bits: 232.8 E(): 1.1e-61 Smith-Waterman score: 2819; 62.197% identity (76.462% similar) in 701 aa overlap (4-655:312-997) 10 20 30 KIAA18 LYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEV :::.::. :::: . : :: :..:: KIAA12 AAGMTPSGMSGPPMGMNQPRPPGISPFGTHGQRMPQQTYPGP-RPQSLPIQNIKRP---- 290 300 310 320 330 40 50 60 70 80 KIAA18 YPGQQYLQGGQYAPSTAQFAPSPGQPPAP-------SPSYPGHRLPLQQGMTQSLSVPGP :::. . ::.:.. :: .::: ::: ::.:::.:.: : . : : : KIAA12 YPGEPNYGNQQYGPNS-QFPTQPGQYPAPNPPRPLTSPNYPGQRMPSQPSSGQ---YPPP 340 350 360 370 380 390 90 100 110 KIAA18 T---GLHYKPT--------------------------RSIP--GYPSSPLPGNPTPPMTP : : .::: : .: .:: ::.:::::::::: KIAA12 TVNMGQYYKPEQFNGQNNTFSGSSYSNYSQGNVNRPPRPVPVANYPHSPVPGNPTPPMTP 400 410 420 430 440 450 120 130 140 150 160 170 KIAA18 SSSVP-YMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQ .::.: :.::.:.:: :: ::.:::...: :.. . ::::::::::::::::::::. KIAA12 GSSIPPYLSPSQDVKPPFPPDIKPNMSALPPPPANHN--DELRLTFPVRDGVVLEPFRLE 460 470 480 490 500 510 180 190 200 210 220 230 KIAA18 HNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIE ::::::::::.:: .:..::. : :::::::::::::::::::::::::::::::::::: KIAA12 HNLAVSNHVFHLRPTVHQTLMWRSDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIE 520 530 540 550 560 570 240 250 260 270 280 290 KIAA18 RGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLL :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: KIAA12 RGDNKTSHKPLHLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLL 580 590 600 610 620 630 300 310 320 330 340 350 KIAA18 PAEHCITKIKRNFSS-GTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRH ::::::::::::::: .. :. :::::::::::::::::::::::::::::::::.: KIAA12 PAEHCITKIKRNFSSVAASSGNTTLNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCKH 640 650 660 670 680 690 360 370 380 390 400 410 KIAA18 IQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTC .:::::::::::::::::::::::::::::::::::::: ::: ::.:..::.:::::: KIAA12 VQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMWGILNAIQHSEFEEVTIDPTC 700 710 720 730 740 750 420 430 440 450 460 470 KIAA18 SWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSV ::.:::.: :.:::..::: :: .:.::....::.::::::::::: .:. :: :: KIAA12 SWRPVPIKSDLHIKDDPDGIPSKRFKTMSPSQMIMPNVMEMIAALGPGPSPY-PLPPPPG 760 770 780 790 800 480 490 500 510 520 530 KIAA18 PAPS-DYPGQGSSFLGPGTFPESFPPTMPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKS . : :: .::... : :.: .:: :. .. .: ::: .:. :.:... . :: KIAA12 GTNSNDYSSQGNNYQGHGNF--DFPHGNPGGTSMNDFMHGPPQLSHPPDMPNNMAALEKP 810 820 830 840 850 860 540 550 560 570 580 KIAA18 TACLPSQ--MAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN--PPPAS---RQSLGQ . : : : :: : : :::. . .. :: ::::. ::: : :: KIAA12 LSH-PMQETMPHAGSSDQPHPSIQQGLHVPHPSSQSGPPLHHSGAPPPPPSQPPRQPPQA 870 880 890 900 910 920 590 600 610 620 630 640 KIAA18 A-SLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNN : : : ..:.:.:.... : . .::.. :::.::::::::::::::::: :::::.:. KIAA12 APSSHPHSDLTFNPSSALEGQAGAQGASDMPEPSLDLLPELTNPDELLSYLDPPDLPSNS 930 940 950 960 970 980 650 KIAA18 NDDLLSLFENN ::::::::::: KIAA12 NDDLLSLFENN 990 655 residues in 1 query sequences 1986850 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:20:48 2008 done: Thu Dec 18 15:20:49 2008 Total Scan time: 0.520 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]