hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15313412/chunk_1/iprscan-20080502-15313412.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1884 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00032 628.3 2.5e-184 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00032 1/12 2 47 .. 1 79 [] 10.4 3.4 SM00032 2/12 52 112 .. 1 79 [] 42.0 7.8e-08 SM00032 3/12 117 170 .. 1 79 [] 60.7 1.8e-13 SM00032 4/12 175 228 .. 1 79 [] 63.9 2e-14 SM00032 5/12 233 286 .. 1 79 [] 51.1 1.4e-10 SM00032 6/12 294 347 .. 1 79 [] 64.3 1.5e-14 SM00032 7/12 352 406 .. 1 79 [] 49.2 5.3e-10 SM00032 8/12 411 466 .. 1 79 [] 51.0 1.5e-10 SM00032 9/12 471 524 .. 1 79 [] 63.9 2.1e-14 SM00032 10/12 529 582 .. 1 79 [] 58.6 7.9e-13 SM00032 11/12 590 644 .. 1 79 [] 63.4 2.9e-14 SM00032 12/12 649 704 .. 1 79 [] 49.7 3.9e-10 Alignments of top-scoring domains: SM00032: domain 1 of 12, from 2 to 47: score 10.4, E = 3.4 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv ++ y++G+++ ysC +GY+l+ KIAA1884 2 FGkE-------------------------YTVGTKAMYSCSEGYHLQ 23 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* g ++t++C++++ Ws++ P+C KIAA1884 24 AGA---------EATAECLDTglWSNRN--VPPQC 47 SM00032: domain 2 of 12, from 52 to 112: score 42.0, E = 7.8e-08 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv Cp+ ++ ++e+Gr++ + y + ++ C+pGY+ + KIAA1884 52 CPdVSSI-SVEHGRWRLIF-------ETQYQFQAQLMLICDPGYYYT 90 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G ++i+C++n++Ws s+ PtC KIAA1884 91 G-----------QRVIRCQANgkWSLGDST--PTC 112 SM00032: domain 3 of 12, from 117 to 170: score 60.7, E = 1.8e-13 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C+++p ++nG+ ++ + yG t+ +sCn+GYtlv KIAA1884 117 CGeLP---IPPNGHRIG----------TLSVYGATAIFSCNSGYTLV 150 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G s++++C++n+ Ws+++ +C KIAA1884 151 G-----------SRVRECMANglWSGSE----VRC 170 SM00032: domain 4 of 12, from 175 to 228: score 63.9, E = 2e-14 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P +i nG++++ + ysy +v y+Cn G++l+ KIAA1884 175 CGtPE---PIVNGHINGEN----------YSYRGSVVYQCNAGFRLI 208 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G s++ C+ +++Ws+++ P+C KIAA1884 209 G-----------MSVRICQQDhhWSGKT----PFC 228 SM00032: domain 5 of 12, from 233 to 286: score 51.1, E = 1.4e-10 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ ++++ ++++ ++y++G +v+ysC tlv KIAA1884 233 CGhPG---SPPHSQMSG----------DSYTVGAVVRYSCIGKRTLV 266 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G +st+ C +++W+++ P C KIAA1884 267 G-----------NSTRMCGLDghWTGSL----PHC 286 SM00032: domain 6 of 12, from 294 to 347: score 64.3, E = 1.5e-14 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ + +G+ + +++ G++ ++sC+ G++l+ KIAA1884 294 CGdPG---IPAHGIRLG----------DSFDPGTVMRFSCEAGHVLR 327 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G ss++tC++n++Ws+++ P C KIAA1884 328 G-----------SSERTCQANgsWSGSQ----PEC 347 SM00032: domain 7 of 12, from 352 to 406: score 49.2, E = 5.3e-10 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ ++ n+rv++s + + s++ y+C++GY+ + KIAA1884 352 CGnPG---TPSNARVVFS---------DGLVFSSSIVYECREGYYAT 386 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G +++C n++W+++ P C KIAA1884 387 G-----------LLSRHCSVNgtWTGSD----PEC 406 SM00032: domain 8 of 12, from 411 to 466: score 51.0, E = 1.5e-10 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ + nG + ++++y+ tvty+C pGY++ KIAA1884 411 CGdPG---IPANGLRLG----------NDFRYNKTVTYQCVPGYMME 444 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* + s++ Ct +++W+++ P C KIAA1884 445 S---------HRVSVLSCTKDrtWNGTK----PVC 466 SM00032: domain 9 of 12, from 471 to 524: score 63.9, E = 2.1e-14 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +Pp i+nG+v++s+ + Gs+vty C +GY+l+ KIAA1884 471 CKpPP---LIPNGKVVGSD----------FMWGSSVTYACLEGYQLS 504 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* +++ tC n++W+++ P+C KIAA1884 505 L-----------PAVFTCEGNgsWTGEL----PQC 524 SM00032: domain 10 of 12, from 529 to 582: score 58.6, E = 7.9e-13 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ ++ Gr + + +sy s+v++sC+p +lv KIAA1884 529 CGdPG---VPSRGRREDRG----------FSYRSSVSFSCHPPLVLV 562 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G s+++ C+s+++Ws+++ P+C KIAA1884 563 G-----------SPRRFCQSDgtWSGTQ----PSC 582 SM00032: domain 11 of 12, from 590 to 644: score 63.4, E = 2.9e-14 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P+ +++ G+ + s+ y +Gstv ++C++GY l+ KIAA1884 590 CAdPG---VPQFGIQNNSQ---------GYQVGSTVLFRCQKGYLLQ 624 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G s+t+tC++n +Ws++p P C KIAA1884 625 G-----------STTRTCLPNltWSGTP----PDC 644 SM00032: domain 12 of 12, from 649 to 704: score 49.7, E = 3.9e-10 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P ++ ++ v + s G t+ ysC++G++l+ KIAA1884 649 CRqPE---TPTHANVGA---------LDLPSMGYTLIYSCQEGFSLK 683 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* Gg s+++tC ++++W+++p P+C KIAA1884 684 GG----------SEHRTCKADgsWTGKP----PIC 704 //