hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15245286/chunk_1/iprscan-20080502-15245286.nocrc
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Query sequence: KIAA1880
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00651.21.fs BTB/POZ domain                             112.7    6.2e-31   2
PF00651.21.ls BTB/POZ domain                             109.9    6.6e-30   1
PF07707.5.ls BTB And C-terminal Kelch                   109.2    1.1e-29   1
PF07707.5.fs BTB And C-terminal Kelch                   108.5    1.9e-29   2
PF00754.15.fs F5/8 type C domain                          43.4    6.9e-12   2
PF00754.15.ls F5/8 type C domain                          32.0      2e-06   2

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00651.21.ls   1/1      56   167 ..     1   135 []   109.9  6.6e-30
PF00651.21.fs   1/2      56   167 ..     1   135 []   108.1  1.1e-29
PF07707.5.fs   2/2     172   270 ..     1   103 []   107.3  4.2e-29
PF07707.5.ls   1/1     172   270 ..     1   103 []   109.2  1.1e-29
PF00754.15.ls   1/2     311   435 ..     1   163 []    22.1   0.0012
PF00754.15.fs   1/2     352   435 ..    62   163 .]    30.7  2.8e-08

Alignments of top-scoring domains:
PF00651.21.ls: domain 1 of 1, from 56 to 167: score 109.9, E = 6.6e-30
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                        +l+  +e+ DVt+vv+         k+f+AH+++Laa+  YF+al
    KIAA1880    56    IGALLIGEEYGDVTFVVE--------KKRFPAHRVILAARCQYFRAL 94   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   + g+     + e ++   ei+l+d ++e+f +lL++iYtg++++t +   
    KIAA1880    95 LYGG-----MRESQPEA-EIPLQDTTAEAFTMLLKYIYTGRATLTDEK-- 136  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         ee + d+L++A +++  p l d   e+l+++l   
    KIAA1880   137 ------EEVLLDFLSLA-HKYGFPELEDSTSEYLCTIL    167  

PF00651.21.fs: domain 1 of 2, from 56 to 167: score 108.1, E = 1.1e-29
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                        +l+  +e+ DVt+vv+         k+f+AH+++Laa+  YF+al
    KIAA1880    56    IGALLIGEEYGDVTFVVE--------KKRFPAHRVILAARCQYFRAL 94   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   + g+     + e ++   ei+l+d ++e+f +lL++iYtg++++t +   
    KIAA1880    95 LYGG-----MRESQPEA-EIPLQDTTAEAFTMLLKYIYTGRATLTDEK-- 136  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         ee + d+L++A +++  p l d   e+l+++l   
    KIAA1880   137 ------EEVLLDFLSLA-HKYGFPELEDSTSEYLCTIL    167  

PF07707.5.fs: domain 2 of 2, from 172 to 270: score 107.3, E = 4.2e-29
                   *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie
                      +++ ++ A  y++++L  +++ f+++n +eV++se Fl+Lsk  L+ 
    KIAA1880   172    VCMTFDVASLYSLPKLTCMCCMFMDRNAQEVLSSEGFLSLSKTALLN 218  

                   lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky
                   ++ +D++  + E ++f A+++W+kh+    k+  +e++++VRLpL+s ++
    KIAA1880   219 IVLRDSF-AAPEKDIFLALLNWCKHN---SKENHAEIMQAVRLPLMSLTE 264  

                   Llevve<-*
                   Ll+vv+   
    KIAA1880   265 LLNVVR    270  

PF07707.5.ls: domain 1 of 1, from 172 to 270: score 109.2, E = 1.1e-29
                   *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie
                      +++ ++ A  y++++L  +++ f+++n +eV++se Fl+Lsk  L+ 
    KIAA1880   172    VCMTFDVASLYSLPKLTCMCCMFMDRNAQEVLSSEGFLSLSKTALLN 218  

                   lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky
                   ++ +D++  + E ++f A+++W+kh+    k+  +e++++VRLpL+s ++
    KIAA1880   219 IVLRDSF-AAPEKDIFLALLNWCKHN---SKENHAEIMQAVRLPLMSLTE 264  

                   Llevve<-*
                   Ll+vv+   
    KIAA1880   265 LLNVVR    270  

PF00754.15.ls: domain 1 of 2, from 311 to 435: score 22.1, E = 0.0012
                   *->qitaSseesgsggagrarLwspaaaalDGngntygh.svspstaWss
                      +  a    ++             +a+lDG+     +++++++ + s 
    KIAA1880   311    KYGAQVVKGEL-----------KSALLDGD-----TqNYDLDHGFS- 340  

                   ekwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggngyvksYkiqyS
                     ++ ++   ++   +++ Lg+p  i+ ++++ +      +  sY i++S
    KIAA1880   341 -RHPIDDDCRSG---IEIKLGQPSIINHIRILLWDRDS--RSYSYFIEVS 384  

                   dDGseevnWttvkdgedilsdsgg.pkiFgndndpvknlfdppikARYvR
                   +D     +W  v d+  +l  +++ +k           l +p+ + RY+R
    KIAA1880   385 MDE-L--DWVRVIDHSQYL--CRSwQK-----------LYFPARVCRYIR 418  

                   ivptswnggggiasraEl<-*
                   iv+t  n+ ++i +++ +   
    KIAA1880   419 IVGT-HNTVNKIFHIVAF    435  

PF00754.15.fs: domain 1 of 2, from 352 to 435: score 30.7, E = 2.8e-08
                   *->lqvDLgkpkkitgvvtqgrqdggngyvksYkiqySdDGseevnWttv
                      +++ Lg+p  i+ ++++ +      +  sY i++S+D     +W  v
    KIAA1880   352    IEIKLGQPSIINHIRILLWDRDS--RSYSYFIEVSMDE-L--DWVRV 393  

                   kdgedilsdsgg.pkiFgndndpvknlfdppikARYvRivptswnggggi
                    d+  +l  +++ +k           l +p+ + RY+Riv+t  n+ ++i
    KIAA1880   394 IDHSQYL--CRSwQK-----------LYFPARVCRYIRIVGT-HNTVNKI 429  

                   asraEl<-*
                    +++ +   
    KIAA1880   430 FHIVAF    435  

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