hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15195146/chunk_1/iprscan-20080502-15195146.nocrc
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Query sequence: KIAA1877
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00777.9.fs    Glycosyltransferase family 29 (sialyl    78.2    1.5e-22   1
PF00777.9.ls    Glycosyltransferase family 29 (sialyl    65.0    2.2e-16   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00777.9.ls      1/1     243   511 ..     1   327 []    65.0  2.2e-16
PF00777.9.fs      1/1     294   511 ..    78   327 .]    78.2  1.5e-22

Alignments of top-scoring domains:
PF00777.9.ls: domain 1 of 1, from 243 to 511: score 65.0, E = 2.2e-16
                   *->CrrkfslaCvFlckwalfrslfnlslpvLlrkapataaLwstlsqkk
                      +r k  +    l+++ l+     l     +r +  t a++s l    
    KIAA1877   243    FRGKREAG---LSRAQLLC---QLRSRARVRTLDGTEAPFSALG--- 280  

                   tPyGlkfksekviasgltLlneeesrdLpedlrylpkqCkrCAVVGNGGI
                       ++ +   v     +L ++        ++r l    ++CAVV + G 
    KIAA1877   281 ----WRRLVPAV-----PLSQL--------HPRGL----RSCAVVMSAGA 309  

                   LkGSrlGaeIdaaDyVfRlNgApiseGfeeDVGtKTSFYGFTvrtvkpsl
                    ++S lG eId++D V+R N+Ap+  G+e+DVG+KT     T+r+++  +
    KIAA1877   310 ILNSSLGEEIDSHDAVLRFNSAPT-RGYEKDVGNKT-----TIRIINSQI 353  

                   vplldlgltsvPqgqlyrvilikslivvwlqarsakrglpvWselvdklq
                    +   + +  +   +ly  +      v w +a +   +l  W + +d+ +
    KIAA1877   354 LTNPSHHFIDS---SLYKDVIL----VAWDPAPYSA-NLNLWYKKPDYNL 395  

                   raekyFGPelspkk.vyllhPdfisylteiiLqyflksglinkrfgdlyv
                    +  +      p +++y+lhP+fi  l  i    ++ ++           
    KIAA1877   396 FTPYIQHRQRNPNQpFYILHPKFIWQLWDI---IQENTKEKIQPN----P 438  

                   pSTGlilvvtALhLCdEVslyGFitdsYCsnksklsviydH..YFerqkl
                   pS G i ++     C EV++y  i +     +  l   y H+ Y++    
    KIAA1877   439 PSSGFIGILIMMSMCREVHVYEYIPSV---RQTELC-HY-HelYYDA--- 480  

                   delifyalHdlslEaklllhLhkaGilkvysrt<-*
                    ++   a H l  E  ll  + + G   ++ r    
    KIAA1877   481 -ACTLGAYHPLLYEK-LLVQRLNMGTQGDLHRK    511  

PF00777.9.fs: domain 1 of 1, from 294 to 511: score 78.2, E = 1.5e-22
                   *->dlrylpkqCkrCAVVGNGGILkGSrlGaeIdaaDyVfRlNgApiseG
                      ++r l    ++CAVV + G  ++S lG eId++D V+R N+Ap+  G
    KIAA1877   294    HPRGL----RSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPT-RG 335  

                   feeDVGtKTSFYGFTvrtvkpslvplldlgltsvPqgqlyrviliksliv
                   +e+DVG+KT     T+r+++  + +   + +  +   +ly  +      v
    KIAA1877   336 YEKDVGNKT-----TIRIINSQILTNPSHHFIDS---SLYKDVIL----V 373  

                   vwlqarsakrglpvWselvdklqraekyFGPelspkk.vyllhPdfisyl
                    w +a +   +l  W + +d+ + +  +      p +++y+lhP+fi  l
    KIAA1877   374 AWDPAPYSA-NLNLWYKKPDYNLFTPYIQHRQRNPNQpFYILHPKFIWQL 422  

                   teiiLqyflksglinkrfgdlyvpSTGlilvvtALhLCdEVslyGFitds
                     i    ++ ++           pS G i ++     C EV++y  i + 
    KIAA1877   423 WDI---IQENTKEKIQPN----PPSSGFIGILIMMSMCREVHVYEYIPSV 465  

                   YCsnksklsviydH..YFerqkldelifyalHdlslEaklllhLhkaGil
                       +  l   y H+ Y++     ++   a H l  E  ll  + + G  
    KIAA1877   466 ---RQTELC-HY-HelYYDA----ACTLGAYHPLLYEK-LLVQRLNMGTQ 505  

                   kvysrt<-*
                    ++ r    
    KIAA1877   506 GDLHRK    511  

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