hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15180892/chunk_1/iprscan-20080502-15180892.nocrc
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Query sequence: KIAA1876
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 199.4    3.4e-55   7
SM00468                                                 122.8    3.9e-32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/7     391   420 ..     1    30 []    35.0  9.9e-06
SM00248    2/7     424   455 ..     1    30 []    32.1  7.7e-05
SM00248    3/7     457   487 ..     1    30 []    40.1    3e-07
SM00248    4/7     491   520 ..     1    30 []    34.8  1.1e-05
SM00248    5/7     524   553 ..     1    30 []    21.3     0.13
SM00248    6/7     557   586 ..     1    30 []    31.6  0.00011
SM00248    7/7     590   623 ..     1    30 []     4.4  1.2e+03
SM00468    1/1     630   729 ..     1   124 []   122.8  3.9e-32

Alignments of top-scoring domains:
SM00248: domain 1 of 7, from 391 to 420: score 35.0, E = 9.9e-06
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      + r+pLH Aae g+++++++L+++ga+i+    
    KIAA1876   391    NKRSPLHAAAEAGHVDICHMLVQAGANIDT    420  

SM00248: domain 2 of 7, from 424 to 455: score 32.1, E = 7.7e-05
                   *->dGrTpLHlAaengnlevvklLldkga..dina<-*
                      d rTpL+ Aaen++le vk+L+++ga  d+ +   
    KIAA1876   424    DQRTPLMEAAENNHLEAVKYLIKAGAlvDPKD    455  

SM00248: domain 3 of 7, from 457 to 487: score 40.1, E = 3e-07
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      +G T+LHlAa++g++evv++Ll++g  d+n+   
    KIAA1876   457    EGSTCLHLAAKKGHYEVVQYLLSNGQmDVNC    487  

SM00248: domain 4 of 7, from 491 to 520: score 34.8, E = 1.1e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+Tp+ +A e++++++vklLl+kg din+   
    KIAA1876   491    GGWTPMIWATEYKHVDLVKLLLSKGSDINI    520  

SM00248: domain 5 of 7, from 524 to 553: score 21.3, E = 0.13
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      + + +LH+Aa +g ++++++Ll ++ d++a   
    KIAA1876   524    EENICLHWAAFSGCVDIAEILLAAKCDLHA    553  

SM00248: domain 6 of 7, from 557 to 586: score 31.6, E = 0.00011
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G++pLH+Aa+++++++v l+l+++ d+++   
    KIAA1876   557    HGDSPLHIAARENRYDCVVLFLSRDSDVTL    586  

SM00248: domain 7 of 7, from 590 to 623: score 4.4, E = 1.2e+03
                   *->dGrTpLHlAaen....gnlevvklLldkgadina<-*
                      +G TpL +A  n++    l + k+L d+ +d      
    KIAA1876   590    EGETPLQCASLNsqvwSALQMSKALQDSAPDRPS    623  

SM00468: domain 1 of 1, from 630 to 729: score 122.8, E = 3.9e-32
                   *->llDisnGkEnvPvplVeNevDedppplPpdFeYiserivgqgvvdIl
                       +Di++G+E++P+p+V N vD +p+  P++++Y+s+++v++ ++   
    KIAA1876   630    SRDIARGYERIPIPCV-NAVDSEPC--PSNYKYVSQNCVTSPMN--- 670  

                   idrspsplsgCsCvdledCsssnmskCeCarknieggefaYkelrldkee
                   idr+ ++l+ C C+d  dCsssn   C C +++   +++++k++      
    KIAA1876   671 IDRNITHLQYCVCID--DCSSSN---CMCGQLS--MRCWYDKDG------ 707  

                   ekkverlngglllkakpvIYECNsrCs<-*
                        rl ++++  ++p+I+ECN +Cs   
    KIAA1876   708 -----RLLPEFNMAEPPLIFECNHACS    729  

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