hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15180892/chunk_1/iprscan-20080502-15180892.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1876 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 203.0 6.6e-58 6 PF00023.20.fs Ankyrin repeat 194.5 2.3e-55 7 PF05033.6.fs Pre-SET motif 123.0 2.1e-37 1 PF05033.6.ls Pre-SET motif 124.8 2.2e-34 1 PF00856.18.fs SET domain 76.2 5.9e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/7 391 423 .. 1 33 [] 30.7 1.4e-07 PF00023.20.ls 1/6 391 423 .. 1 33 [] 32.7 1.2e-06 PF00023.20.ls 2/6 424 456 .. 1 33 [] 38.3 2.5e-08 PF00023.20.fs 2/7 424 456 .. 1 33 [] 36.3 3.9e-09 PF00023.20.fs 3/7 457 490 .. 1 33 [] 34.8 1e-08 PF00023.20.ls 3/6 457 490 .. 1 33 [] 36.8 7.2e-08 PF00023.20.fs 4/7 491 523 .. 1 33 [] 34.6 1.2e-08 PF00023.20.ls 4/6 491 523 .. 1 33 [] 36.6 8.1e-08 PF00023.20.fs 5/7 524 556 .. 1 33 [] 24.1 1e-05 PF00023.20.ls 5/6 524 556 .. 1 33 [] 26.1 0.00012 PF00023.20.ls 6/6 557 589 .. 1 33 [] 32.6 1.3e-06 PF00023.20.fs 6/7 557 589 .. 1 33 [] 30.6 1.5e-07 PF00023.20.fs 7/7 590 601 .. 1 12 [. 3.5 5.4 PF05033.6.ls 1/1 632 737 .. 1 123 [] 124.8 2.2e-34 PF05033.6.fs 1/1 632 737 .. 1 123 [] 123.0 2.1e-37 PF00856.18.fs 1/1 739 798 .. 1 76 [. 76.2 5.9e-21 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 7, from 391 to 423: score 30.7, E = 1.4e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + ++PLH Aa+ g+++++ +L+++GA+++ KIAA1876 391 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE 423 PF00023.20.ls: domain 1 of 6, from 391 to 423: score 32.7, E = 1.2e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + ++PLH Aa+ g+++++ +L+++GA+++ KIAA1876 391 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE 423 PF00023.20.ls: domain 2 of 6, from 424 to 456: score 38.3, E = 2.5e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +TPL+ Aa++++le vk+L+++GA ++ +d KIAA1876 424 DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA 456 PF00023.20.fs: domain 2 of 7, from 424 to 456: score 36.3, E = 3.9e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +TPL+ Aa++++le vk+L+++GA ++ +d KIAA1876 424 DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA 456 PF00023.20.fs: domain 3 of 7, from 457 to 490: score 34.8, E = 1e-08 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* +G T+LHlAa++g++evv++Lls+ d+n qdd KIAA1876 457 EGSTCLHLAAKKGHYEVVQYLLSnGQMDVNCQDD 490 PF00023.20.ls: domain 3 of 6, from 457 to 490: score 36.8, E = 7.2e-08 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* +G T+LHlAa++g++evv++Lls+ d+n qdd KIAA1876 457 EGSTCLHLAAKKGHYEVVQYLLSnGQMDVNCQDD 490 PF00023.20.fs: domain 4 of 7, from 491 to 523: score 34.6, E = 1.2e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TP +A ++ ++++vklLls+G d+n++d+ KIAA1876 491 GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN 523 PF00023.20.ls: domain 4 of 6, from 491 to 523: score 36.6, E = 8.1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TP +A ++ ++++vklLls+G d+n++d+ KIAA1876 491 GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN 523 PF00023.20.fs: domain 5 of 7, from 524 to 556: score 24.1, E = 1e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + + +LH+Aa++g++++++ Ll + +dl+a++ KIAA1876 524 EENICLHWAAFSGCVDIAEILLAAKCDLHAVNI 556 PF00023.20.ls: domain 5 of 6, from 524 to 556: score 26.1, E = 0.00012 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + + +LH+Aa++g++++++ Ll + +dl+a++ KIAA1876 524 EENICLHWAAFSGCVDIAEILLAAKCDLHAVNI 556 PF00023.20.ls: domain 6 of 6, from 557 to 589: score 32.6, E = 1.3e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G++PLH+Aa+ +++++v l+ls+ d+ ++++ KIAA1876 557 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 589 PF00023.20.fs: domain 6 of 7, from 557 to 589: score 30.6, E = 1.5e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G++PLH+Aa+ +++++v l+ls+ d+ ++++ KIAA1876 557 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 589 PF00023.20.fs: domain 7 of 7, from 590 to 601: score 3.5, E = 5.4 *->dGfTPLHlAalr<-* +G+TPL +A+l+ KIAA1876 590 EGETPLQCASLN 601 PF05033.6.ls: domain 1 of 1, from 632 to 737: score 124.8, E = 2.2e-34 *->DisrgkEsvpIplvENeVDldkpiPedFtYIneyiygegvipiqseW Di+rg+E +pIp+v N VD++++ P++++Y++++++ ++ ++i+++ KIAA1876 632 DIARGYERIPIPCV-NAVDSEPC-PSNYKYVSQNCV-TSPMNIDRN- 674 WSleftsGCeCtddlsCspdsskCaCgrlsgnggaypPglvfpneeydnd +++++ C C d +Cs ss+C Cg+ls +++ yd+d KIAA1876 675 --ITHLQYCVCID--DCS--SSNCMCGQLSMRCW------------YDKD 706 gilve.....pgpvIYECNsrCkCgpsCkNR<-* g+l+ + + ++p+I+ECN +C+C+++C+NR KIAA1876 707 GRLLPefnmaEPPLIFECNHACSCWRNCRNR 737 PF05033.6.fs: domain 1 of 1, from 632 to 737: score 123.0, E = 2.1e-37 *->DisrgkEsvpIplvENeVDldkpiPedFtYIneyiygegvipiqseW Di+rg+E +pIp+v N VD++++ P++++Y++++++ ++ ++i+++ KIAA1876 632 DIARGYERIPIPCV-NAVDSEPC-PSNYKYVSQNCV-TSPMNIDRN- 674 WSleftsGCeCtddlsCspdsskCaCgrlsgnggaypPglvfpneeydnd +++++ C C d +Cs ss+C Cg+ls +++ yd+d KIAA1876 675 --ITHLQYCVCID--DCS--SSNCMCGQLSMRCW------------YDKD 706 gilve.....pgpvIYECNsrCkCgpsCkNR<-* g+l+ + + ++p+I+ECN +C+C+++C+NR KIAA1876 707 GRLLPefnmaEPPLIFECNHACSCWRNCRNR 737 PF00856.18.fs: domain 1 of 1, from 739 to 798: score 76.2, E = 5.9e-21 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae vq g ++rl++++t+ GwG+r+++dIp+G+f++EY+Geli+++ea+ KIAA1876 739 VQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEAD 785 kreddllglklydndgdksldeYlfdlda<-* re +d Ylfdld+ KIAA1876 786 VRE------------EDS----YLFDLDN 798 //