hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15112641/chunk_1/iprscan-20080502-15112641.nocrc
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Query sequence: KIAA1872
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00516                                                  43.2    3.4e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00516    1/1     234   388 ..     1   184 []    43.2  3.4e-08

Alignments of top-scoring domains:
SM00516: domain 1 of 1, from 234 to 388: score 43.2, E = 3.4e-08
                   *->elevgkayipggrigtregyDkdGrpVlieragrfdpkgllk.svtl
                       ++  k++  gg+      y+   ++++++ a+ ++ + l++  +++
    KIAA1872   234    IRPYMKVVTHGGY------YGEGLNAIIVFAACFLPDSSLPDyHYIM 274  

                   eellrylvyvlEkalqelpaklekktggiegftvifDlkglsmsnfwspd
                   e+l+ y+++ lE  + e        ++ i+++ + +  + +++       
    KIAA1872   275 ENLFLYVISSLELLVAE--------DYMIVYLNGATPRRRMPG------- 309  

                   lsllrkilkilqdhYPErLgkvliiNpPwvmaffrvlwkiikpFldektr
                   +++l+k+++++++  +++L+ ++i++p w   f+r++  i +pF++ k+ 
    KIAA1872   310 IGWLKKCYQMIDRRLRKNLKSLIIVHPSW---FIRTVLAISRPFISVKFI 356  

                   eKivfvgpnkVsdsdwkeeLlkyidpe..qLPeelGGtlk<-*
                   +Ki +v +         e+L + i+ e+ q+P++   + +   
    KIAA1872   357 NKIQYVHS--------LEDLEQLIPMEhvQIPDCVLQYEE    388  

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